Gene: LINC00333

100874128
NCRNA00333
long intergenic non-protein coding RNA 333
ncRNA
13q31.1
Ensembl:ENSG00000233349
NC_000013.11
SNP Mapped
1   ANCO-SNPs
ND
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
5.359e-1 (AD)  8.160e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs17371334chr13:84458192 (GRCh38.p7)T>Gnicotine dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
TCP11X20.459
KLHL380.425
HNF1A0.398
PCDHA80.396
NTSR10.396
IRGC0.39
ANKRD34C0.388
MSH40.383
ULBP30.383
KCNH50.37

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
ALDH3B1-0.314
HMGN5-0.292
ASB4-0.29
COPZ2-0.273
PHYHD1-0.265
OMD-0.264
TLCD1-0.263
ENDOU-0.261
APCDD1-0.26
RAB34-0.255

Drugs/Compounds

    There is no DrugBank record for this gene !

    There is no CTD record for this GENE !

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal