Gene: LINC00423

100874167
-
long intergenic non-protein coding RNA 423
ncRNA
13q13.1
Ensembl:ENSG00000226968
NC_000013.11
SNP Mapped
1   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
4.537e-1 (AD)  8.956e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs990324chr13:32813108 (GRCh38.p7)A>Galcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
XAGE1A0.885
OPN1LW0.718
OR52B40.634
C3orf840.62
CCL240.593
TRIM550.581
SPINK60.543
DSG10.536
ADIPOQ0.528
HSFY10.526

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
ARSE-0.221
HEMK1-0.217
THTPA-0.214
RABGEF1-0.198
MRM1-0.193
CCDC61-0.192
REXO4-0.188
MAMDC4-0.185
IFT140-0.185
OGG1-0.18

Drugs/Compounds

    There is no DrugBank record for this gene !

    There is no CTD record for this GENE !

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal