Gene: GRIN2C

2905
GluN2C|NMDAR2C|NR2C
glutamate ionotropic receptor NMDA type subunit 2C
protein-coding
17q25.1
Ensembl:ENSG00000161509 MIM:138254 Vega:OTTHUMG00000044524 UniprotKB:Q14957
NC_000017.11
PubMed|SNP Mapped
AD
3   
NA (AD)  NA (ND)   (Frontal_Cortex)
1.145e-2 (AD)  8.500e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs690371chr17:74862956 (GRCh38.p7)G>Aalcohol dependenceSNV(Single Nucleotide Variation)
rs2683267chr17:74858860 (GRCh38.p7)C>Talcohol dependenceSNV(Single Nucleotide Variation)
rs690578chr17:74857308 (GRCh38.p7)A>Galcohol dependenceSNV(Single Nucleotide Variation)
rs690533chr17:74854034 (GRCh38.p7)G>Aalcohol dependenceSNV(Single Nucleotide Variation)
rs11652088chr17:74843693 (GRCh38.p7)G>Aalcohol dependenceSNV(Single Nucleotide Variation)
rs9901283chr17:74841693 (GRCh38.p7)G>Aalcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

Probe Locus(GRCh37) Gene Region p-val Trait PubMed ID
cg23119809chr17:72839750GRIN2CGene body1.805e-5Alcohol use disorders26763658
cg12536809chr17:72852514GRIN2CPromoter5.314e-4Alcohol use disorders26763658

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
MLC10.907
GPR37L10.905
FGFR30.902
BMP70.899
SLC7A100.892
ACSS10.886
CLDN100.883
SLC1A20.882
PSD20.876
ACSBG10.875

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
EMB-0.451
TDRD1-0.429
SYNPO2-0.419
CCDC68-0.416
CD163L1-0.408
DKK2-0.407
PLA2G4A-0.402
NOX4-0.394
CPXM2-0.393
TNFRSF19-0.392

Drugs/Compounds

ID Drug Name Drug Type CAS Num Status Role
DB00142Glutamic AcidSmall Molecule56-86-0Approved|NutraceuticalTarget
DB00145GlycineSmall Molecule56-40-6Approved|NutraceuticalTarget
DB00454PethidineSmall Molecule57-42-1ApprovedTarget
DB01520TenocyclidineSmall Molecule21500-98-1Experimental|Illicit|InvestigationalTarget
DB00659AcamprosateSmall Molecule77337-76-9Approved|InvestigationalTarget
DB06741GavestinelSmall Molecule153436-22-7InvestigationalTarget
DB09409Magnesium acetate tetrahydrateSmall Molecule16674-78-5ApprovedTarget
DB09481Magnesium carbonateSmall Molecule546-93-0Approved|InvestigationalTarget
DB13146Fluciclovine (18F)Small Molecule222727-39-1ApprovedTarget
DB00289AtomoxetineSmall Molecule83015-26-3ApprovedTarget
DB00312PentobarbitalSmall Molecule76-74-4Approved|InvestigationalTarget
DB00418SecobarbitalSmall Molecule76-73-3ApprovedTarget
DB00996GabapentinSmall Molecule60142-96-3Approved|InvestigationalTarget
DB01174PhenobarbitalSmall Molecule50-06-6Approved|InvestigationalTarget
DB01708PrasteroneSmall Molecule53-43-0Approved|Investigational|NutraceuticalTarget
DB04896MilnacipranSmall Molecule92623-85-3Approved|InvestigationalTarget
DB06738KetobemidoneSmall Molecule469-79-4Approved|InvestigationalTarget
ID Drug Name Action PubMed
C0297902,2',3',4,4',5-hexachlorobiphenyl"[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with PCB 180] results in decreased expression of GRIN2C mRNA"25510870
C0297902,2',3',4,4',5-hexachlorobiphenyl"2,2',3',4,4',5-hexachlorobiphenyl results in increased expression of GRIN2C protein"20297801
C5112952,2',4,4'-tetrabromodiphenyl ether"2,2',4,4'-tetrabromodiphenyl ether results in decreased expression of GRIN2C mRNA"22467012
C0291412,2,5,7,8-pentamethyl-1-hydroxychroman"2,2,5,7,8-pentamethyl-1-hydroxychroman results in increased expression of GRIN2C mRNA"21920950
C1111182',3,3',4',5-pentachloro-4-hydroxybiphenyl"2',3,3',4',5-pentachloro-4-hydroxybiphenyl affects the expression of GRIN2C mRNA"19114083
C0817662,4,4'-trichlorobiphenyl"[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with PCB 180] results in decreased expression of GRIN2C mRNA"25510870
C0140242,4,5,2',4',5'-hexachlorobiphenyl"[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with PCB 180] results in decreased expression of GRIN2C mRNA"25510870
C0098282,4,5,2',5'-pentachlorobiphenyl"[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with PCB 180] results in decreased expression of GRIN2C mRNA"25510870
C0094072,5,2',5'-tetrachlorobiphenyl"[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with PCB 180] results in decreased expression of GRIN2C mRNA"25510870
C491996(2S*,3R*)-1-(biphenyl-4-carbonyl)piperazine-2,3-dicarboxylic acid"(2S*,3R*)-1-(biphenyl-4-carbonyl)piperazine-2,3-dicarboxylic acid analog binds to and results in decreased activity of [GRIN2C protein binds to GRIN1 protein]"14718249
C491996(2S*,3R*)-1-(biphenyl-4-carbonyl)piperazine-2,3-dicarboxylic acid"(2S*,3R*)-1-(biphenyl-4-carbonyl)piperazine-2,3-dicarboxylic acid binds to and results in decreased activity of [GRIN2C protein binds to GRIN1 protein]"14718249
C0505923-(2-carboxypiperazin-4-yl)propyl-1-phosphonic acid3-(2-carboxypiperazin-4-yl)propyl-1-phosphonic acid binds to and results in decreased activity of [GRIN2C protein binds to GRIN1 protein]14718249
C0352074-amino-2,6-dinitrotoluene"4-amino-2,6-dinitrotoluene affects the expression of GRIN2C mRNA"21346803
C4985545-(alpha-methyl-4-bromobenzylamino)phosphonomethyl-1,4-dihydroquinoxaline-2,3-dione"5-(alpha-methyl-4-bromobenzylamino)phosphonomethyl-1,4-dihydroquinoxaline-2,3-dione binds to and results in decreased activity of [GRIN2C protein binds to GRIN1 protein]"14718249
D000082AcetaminophenAcetaminophen results in increased expression of GRIN2C mRNA23824016
D016604Aflatoxin B1Aflatoxin B1 results in increased expression of GRIN2C mRNA21641981|2210060
D016604Aflatoxin B1Aflatoxin B1 affects the expression of GRIN2C mRNA22545673
D016604Aflatoxin B1Aflatoxin B1 results in decreased expression of GRIN2C mRNA23630614
D016604Aflatoxin B1Aflatoxin B1 results in increased expression of GRIN2C mRNA23630614
D000376AgmatineAgmatine results in decreased activity of [GRIN2C protein binds to GRIN1 protein]15982768
D000535Aluminum[APP protein modified form binds to Aluminum] which results in increased expression of GRIN2C mRNA21298039
D0150742-Aminoadipic Acid2-Aminoadipic Acid binds to and results in decreased activity of [GRIN2C protein binds to GRIN1 protein]14718249
D000643Ammonium ChlorideGRIN2C protein affects the susceptibility to Ammonium Chloride12971910
D000643Ammonium Chloridetraxoprodil mesylate promotes the reaction [GRIN2C protein affects the susceptibility to Ammonium Chloride]12971910
D000643Ammonium ChlorideAmmonium Chloride affects the expression of GRIN2C mRNA16483693
C006703benzo(b)fluoranthenebenzo(b)fluoranthene results in increased expression of GRIN2C mRNA26377693
D001564Benzo(a)pyreneBenzo(a)pyrene results in decreased expression of GRIN2C mRNA21569818
C095105bexarotenebexarotene results in increased expression of GRIN2C mRNA17630414
C006780bisphenol Abisphenol A results in decreased methylation of GRIN2C promoter27312807
C006780bisphenol A[bisphenol A co-treated with enzacamene co-treated with octylmethoxycinnamate co-treated with butylparaben] results in decreased expression of GRIN2C mRNA25607892
C006780bisphenol Abisphenol A results in decreased expression of GRIN2C mRNA25181051
D020122tert-Butylhydroperoxidetert-Butylhydroperoxide results in increased expression of GRIN2C mRNA12414654
C038091butylparaben[bisphenol A co-treated with enzacamene co-treated with octylmethoxycinnamate co-treated with butylparaben] results in decreased expression of GRIN2C mRNA25607892
D000068579CelecoxibCelecoxib promotes the reaction [Kainic Acid results in decreased expression of GRIN2C mRNA]21589914
D002794Choline[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased methylation of GRIN2C gene20938992
D002994ClofibrateClofibrate results in increased expression of GRIN2C mRNA22008526
D003024ClozapineClozapine results in decreased expression of GRIN2C mRNA18923069
D003042CocaineCocaine affects the expression of GRIN2C mRNA20187946
C055407conotoxin GVconotoxin GV results in decreased activity of [GRIN1A protein co-treated with GRIN2C protein]21396956
D003471CuprizoneCuprizone results in decreased expression of GRIN2C mRNA26577399|2752363
D003976DiazinonDiazinon results in increased expression of GRIN2C mRNA17452286|1944049
D002945Cisplatin[Cisplatin co-treated with jinfukang] results in increased expression of GRIN2C mRNA27392435
D002945CisplatinCisplatin results in increased expression of GRIN2C mRNA27392435
D004026DieldrinDieldrin affects the expression of GRIN2C mRNA19440498
D016291Dizocilpine MaleateDizocilpine Maleate results in decreased expression of GRIN2C mRNA11169168
C038939enzacamene[bisphenol A co-treated with enzacamene co-treated with octylmethoxycinnamate co-treated with butylparaben] results in decreased expression of GRIN2C mRNA25607892
C074283estradiol 3-benzoateestradiol 3-benzoate results in increased expression of GRIN2C mRNA21277884
D000431EthanolEthanol results in decreased expression of GRIN2C mRNA20655511
D004997Ethinyl EstradiolEthinyl Estradiol results in increased expression of GRIN2C mRNA17942748
D004997Ethinyl Estradiol[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of GRIN2C mRNA17942748
D005020Ethyl MethanesulfonateEthyl Methanesulfonate results in increased expression of GRIN2C mRNA23649840
D018690Excitatory Amino Acid AgonistsExcitatory Amino Acid Agonists results in increased expression of GRIN2C mRNA28987794
C047360felbamatefelbamate results in decreased activity of [GRIN1 protein alternative form binds to GRIN2C protein]10690753
C047360felbamatefelbamate results in decreased activity of [GRIN1 protein binds to GRIN2C protein]10215667
D005492Folic Acid[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased methylation of GRIN2C gene20938992
D004397FonofosFonofos results in increased methylation of GRIN2C promoter22847954
D005839GentamicinsGentamicins results in increased expression of GRIN2C protein15200423
D006220HaloperidolHaloperidol results in increased expression of GRIN2C mRNA15860345
C089796hexabromocyclododecanehexabromocyclododecane affects the expression of GRIN2C mRNA24680724
D006861Hydrogen PeroxideHydrogen Peroxide affects the expression of GRIN2C mRNA20044591
D006861Hydrogen PeroxideHydrogen Peroxide results in increased expression of GRIN2C mRNA12414654
C016517indole-3-carbinolindole-3-carbinol affects the expression of GRIN2C mRNA21396975
C016517indole-3-carbinolindole-3-carbinol results in increased expression of GRIN2C mRNA23824016
C544151jinfukang[Cisplatin co-treated with jinfukang] results in increased expression of GRIN2C mRNA27392435
C544151jinfukangjinfukang results in decreased expression of GRIN2C mRNA27392435
D007608Kainic AcidCelecoxib promotes the reaction [Kainic Acid results in decreased expression of GRIN2C mRNA]21589914
D007608Kainic AcidKainic Acid results in decreased expression of GRIN2C mRNA21589914
D007608Kainic AcidPTGS2 affects the reaction [Kainic Acid results in decreased expression of GRIN2C mRNA]21589914
D007649KetamineKetamine results in increased expression of GRIN2C mRNA20080153
C008261lead acetatelead acetate results in increased expression of GRIN2C mRNA24260418
C017461lead nitratelead nitrate results in increased expression of GRIN2C mRNA23358146
D008558MelphalanMelphalan results in increased expression of GRIN2C mRNA22363485
D008715Methionine[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased methylation of GRIN2C gene20938992
D008727MethotrexateMethotrexate results in increased expression of GRIN2C mRNA21678067
C004925methylmercuric chloridemethylmercuric chloride results in increased expression of GRIN2C mRNA19409459
D008911MinocyclineMinocycline inhibits the reaction [Poly C results in increased expression of GRIN2C mRNA]19660546
D009020MorphineMorphine results in increased expression of GRIN2C mRNA15183518
D037742Nanotubes, Carbon"Nanotubes, Carbon results in increased expression of GRIN2C mRNA"25554681
D009284NaphtholsNaphthols metabolite results in decreased activity of [GRIN1 protein binds to GRIN2C protein]20858708
D009532NickelNickel results in decreased expression of GRIN2C mRNA19440498
C028007nickel monoxidenickel monoxide results in increased expression of GRIN2C mRNA19167457
C118580octylmethoxycinnamate[bisphenol A co-treated with enzacamene co-treated with octylmethoxycinnamate co-treated with butylparaben] results in decreased expression of GRIN2C mRNA25607892
D010069OxadiazolesOxadiazoles metabolite results in increased activity of [GRIN1 protein binds to GRIN2C protein]20858708
D010269ParaquatParaquat results in increased expression of GRIN2C mRNA18198484
D010278ParathionParathion results in increased methylation of GRIN2C promoter22847954
C410127PCB 180"[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with PCB 180] results in decreased expression of GRIN2C mRNA"25510870
C410127PCB 180PCB 180 results in decreased expression of GRIN2C protein20297801
D010424PentobarbitalPentobarbital affects the expression of GRIN2C mRNA9814547
D010616PhenanthrenesPhenanthrenes binds to and results in decreased activity of [GRIN2C protein binds to GRIN1 protein]14718249
D010616PhenanthrenesPhenanthrenes metabolite results in decreased activity of [GRIN1 protein binds to GRIN2C protein]20858708
D010616PhenanthrenesPhenanthrenes metabolite results in increased activity of [GRIN1 protein binds to GRIN2C protein]20858708
D010634PhenobarbitalPhenobarbital results in increased expression of GRIN2C mRNA22008526
D010879PiperazinesPiperazines metabolite binds to and results in decreased activity of GRIN2C protein19684252
D010882Piperonyl ButoxidePiperonyl Butoxide results in increased expression of GRIN2C mRNA22008526|2248451
D010936Plant ExtractsPlant Extracts results in decreased expression of GRIN2C mRNA23557933
D011066Poly CMinocycline inhibits the reaction [Poly C results in increased expression of GRIN2C mRNA]19660546
D011066Poly CPoly C results in increased expression of GRIN2C mRNA19660546
C005556propionaldehydepropionaldehyde results in increased expression of GRIN2C mRNA26079696
C065286SDZ EAA 494SDZ EAA 494 binds to and results in decreased activity of [GRIN2C protein binds to GRIN1 protein]14718249
D012822Silicon DioxideSilicon Dioxide analog results in decreased expression of GRIN2C mRNA25895662
C012568terbufosterbufos results in increased methylation of GRIN2C promoter22847954
D013749TetrachlorodibenzodioxinTetrachlorodibenzodioxin affects the expression of GRIN2C mRNA24680724
D013749Tetrachlorodibenzodioxin[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of GRIN2C mRNA17942748
C095106traxoprodil mesylatetraxoprodil mesylate promotes the reaction [GRIN2C protein affects the susceptibility to Ammonium Chloride]12971910
C015559trimellitic anhydridetrimellitic anhydride results in decreased expression of GRIN2C mRNA19042947
C016805tris(1,3-dichloro-2-propyl)phosphate"tris(1,3-dichloro-2-propyl)phosphate results in decreased expression of GRIN2C mRNA"26179874
D014520UrethaneUrethane results in increased expression of GRIN2C mRNA28818685
D014635Valproic AcidValproic Acid results in increased methylation of GRIN2C gene29154799
D024483Vitamin K 3Vitamin K 3 results in increased expression of GRIN2C mRNA12414654

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO:0004972NMDA glutamate receptor activity-IBA21873635  
GO:0004972NMDA glutamate receptor activity-IDA26919761  
GO:0004972NMDA glutamate receptor activity-TAS17526495  
GO:0005088Ras guanyl-nucleotide exchange factor activity-TAS-  
GO:0005234extracellularly glutamate-gated ion channel activity-IEA-  
GO:0005515protein binding-IPI11937501  
GO:0022849glutamate-gated calcium ion channel activity-IDA26875626  
GO ID GO Term Qualifier Evidence PubMed
GO:0000165MAPK cascade-TAS-  
GO:0007215glutamate receptor signaling pathway-TAS9798920  
GO:0007420brain development-NAS17526495  
GO:0009611response to wounding-IEA-  
GO:0019722calcium-mediated signaling-IEA-  
GO:0033058directional locomotion-IEA-  
GO:0035235ionotropic glutamate receptor signaling pathway-IEA-  
GO:0042177negative regulation of protein catabolic process-IEA-  
GO:0048167regulation of synaptic plasticity-NAS17526495  
GO:0050885neuromuscular process controlling balance-IEA-  
GO:0060079excitatory postsynaptic potential-IBA21873635  
GO:0060079excitatory postsynaptic potential-IEA-  
GO:0060291long-term synaptic potentiation-IBA21873635  
GO:0097553calcium ion transmembrane import into cytosol-IDA26875626  
GO:0098976excitatory chemical synaptic transmission-NAS17526495  
GO:1903539protein localization to postsynaptic membrane-IEA-  
GO ID GO Term Qualifier Evidence PubMed
GO:0005622intracellular-IEA-  
GO:0005886plasma membrane-IBA21873635  
GO:0005886plasma membrane-TAS-  
GO:0005887integral component of plasma membrane-IDA26875626  26919761  
GO:0017146NMDA selective glutamate receptor complex-IBA21873635  
GO:0017146NMDA selective glutamate receptor complex-IDA26875626  26919761  
GO:0017146NMDA selective glutamate receptor complex-TAS17526495  
GO:0030054cell junction-IEA-  
GO:0045211postsynaptic membrane-IEA-  
GO:0098839postsynaptic density membrane-IBA21873635  
KEGG ID KEGG Term
hsa04020Calcium signaling pathway
hsa04080Neuroactive ligand-receptor interaction
hsa04720Long-term potentiation
hsa05010Alzheimer's disease
hsa05014Amyotrophic lateral sclerosis (ALS)
Reactome ID Reactome Term Evidence
R-HSA-112314Neurotransmitter receptors and postsynaptic signal transmissionTAS
R-HSA-112315Transmission across Chemical SynapsesTAS
R-HSA-112316Neuronal SystemTAS
R-HSA-112316Neuronal SystemIEA
R-HSA-162582Signal TransductionTAS
R-HSA-438064Post NMDA receptor activation eventsTAS
R-HSA-438066Unblocking of NMDA receptor, glutamate binding and activationTAS
R-HSA-442729CREB phosphorylation through the activation of CaMKIITAS
R-HSA-442742CREB phosphorylation through the activation of RasTAS
R-HSA-442755Activation of NMDA receptor and postsynaptic eventsTAS
R-HSA-442982Ras activation upon Ca2+ influx through NMDA receptorTAS
R-HSA-5673001RAF/MAP kinase cascadeTAS
R-HSA-5683057MAPK family signaling cascadesTAS
R-HSA-5684996MAPK1/MAPK3 signalingTAS
R-HSA-6794361Neurexins and neuroliginsIEA
R-HSA-6794362Protein-protein interactions at synapsesTAS
R-HSA-6794362Protein-protein interactions at synapsesIEA
R-HSA-8849932Synaptic adhesion-like moleculesTAS

Interactions (STRING v10.5, Interaction Score >= 0.400)

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal
26289945The effects of single nucleotide polymorphisms in glutamatergic neurotransmission genes on neural response to alcohol cues and craving. (2015 Nov)Bach PAddict Biol
18444252Neurotransmission and bipolar disorder: a systematic family-based association study. (2008 Oct 5)Shi JAm J Med Genet B Neuropsychiatr Genet
25655461Clinically relevant genetic biomarkers from the brain in alcoholism with representation on high resolution chromosome ideograms. (2015 Apr 15)Manzardo AMGene