Gene info: ID 401172

Gene: LINC02145

GENE ID: 401172

Synonyms: -

Description: long intergenic non-protein coding RNA 2145

Gene type: ncRNA

Location: 5p15.31

dbXrefs: Ensembl:ENSG00000250490

RefSeq: NC_000005.10

Retrived from: SNP Mapped

SNPs: 2 ANCO-SNPs

Phenotype: AD

# Publications: 0

Sherlock p-value : 3.763e-2 (AD) 6.836e-1 (ND) (Frontal_Cortex)

Pascal p-value : 2.310e-1 (AD) 1.704e-1 (ND)

ANCO-SNPs

SNP ID	Position	Alleles	Trait	Variation Type
rs4345283	chr5:6325737 (GRCh38.p7)	A>C	alcohol dependence	SNV(Single Nucleotide Variation)
rs12716179	chr5:6317193 (GRCh38.p7)	T>C	alcohol dependence	SNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

There is no DrugBank record for this gene !

ID	Drug Name	Action	PubMed
D014635	Valproic Acid	Valproic Acid results in increased methylation of LINC02145 gene	29154799

GO/Pathway

GO ID	GO Term	Qualifier	Evidence	PubMed

GO ID	GO Term	Qualifier	Evidence	PubMed

GO ID	GO Term	Qualifier	Evidence	PubMed

KEGG ID	KEGG Term

Reactome ID	Reactome Term	Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID	Title (Year)	Author	Journal