DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
GLR
Uniprot ID:
Q9BTD8
Source protein:
RNA-binding protein 42
Source gene:
RBM42
Class:
DEG_APCC_TPR_1
Location:
478:480
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9441
ASA_SCORE:
133.1333
COIL:
0.9777
CONS_SCORE:
0.4093
DSS_SCORE:
0.955
HELIX:
0.025
FCONS_SCORE:
0.8249
RIG_SCORE:
0.7321
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q471H
TCGA-AP-A1E0
UCEC
TCGA
GLR
DEG_APCC_TPR_1
0.1389
p.R468H
TCGA-BR-8372
STAD
TCGA
GLR
DEG_APCC_TPR_1
0.0556
p.K476E
TCGA-DI-A1BU
UCEC
TCGA
GLR
DEG_APCC_TPR_1
0.2778
p.G478C
SIDM00585
Hepatocellular Carcinoma
GDSC
GLR
DEG_APCC_TPR_1
0.6489
p.G478C
ACH-000480
Liver Cancer
CCLE
GLR
DEG_APCC_TPR_1
0.6489
p.G478C
HuH-7
liver
COSMIC
GLR
DEG_APCC_TPR_1
0.6489
Drug responses associated with RBM42 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GLR
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43293
Death-associated protein kinase 3
DEG_APCC_TPR_1
452:454
GLR
APC,CDC20,FZR1
0.9358
More...
P17026
Zinc finger protein 22
DEG_APCC_TPR_1
222:224
GLR
APC,CDC20,FZR1
0.7778
More...
Q9BTD8
RNA-binding protein 42
DEG_APCC_TPR_1
478:480
GLR
APC,CDC20,FZR1
0.9441
More...