DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LDMYGE
Uniprot ID:
Q9Y2T2
Source protein:
AP-3 complex subunit mu-1
Source gene:
AP3M1
Class:
LIG_APCC_ABBA_1
Location:
392:397
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5068
ASA_SCORE:
54.4167
COIL:
0.3648
CONS_SCORE:
0.5874
DSS_SCORE:
0.1661
HELIX:
0.0082
FCONS_SCORE:
0.887
RIG_SCORE:
0.8254
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A383D
TCGA-A5-A0G2
UCEC
TCGA
LDMYGE
LIG_APCC_ABBA_1
0.0833
p.A383D
DO41235
UCEC
ICGC
LDMYGE
LIG_APCC_ABBA_1
0.0833
p.G396W
TCGA-AX-A2HA
UCEC
TCGA
LDMYGE
LIG_APCC_ABBA_1
0.6714
p.G396W
DO42504
UCEC
ICGC
LDMYGE
LIG_APCC_ABBA_1
0.6714
p.R391H
TCGA-B5-A1MR
UCEC
TCGA
LDMYGE
LIG_APCC_ABBA_1
0.3056
p.R391H
TCGA-BR-8371
STAD
TCGA
LDMYGE
LIG_APCC_ABBA_1
0.3056
p.R391H
TCGA-N9-A4Q7
UCS
TCGA
LDMYGE
LIG_APCC_ABBA_1
0.3056
p.R391H
DO47950
STAD
ICGC
LDMYGE
LIG_APCC_ABBA_1
0.3056
p.R391H
DO41758
UCEC
ICGC
LDMYGE
LIG_APCC_ABBA_1
0.3056
p.S385L
TCGA-B6-A0IO
BRCA
TCGA
LDMYGE
LIG_APCC_ABBA_1
0.1389
p.S385L
DO3067
BRCA
ICGC
LDMYGE
LIG_APCC_ABBA_1
0.1389
p.Y395H
TCGA-CA-6717
COAD
TCGA
LDMYGE
LIG_APCC_ABBA_1
0.6118
p.Y395H
DO8264
COAD
ICGC
LDMYGE
LIG_APCC_ABBA_1
0.6118
p.Y399C
TCGA-EL-A3CW
THCA
TCGA
LDMYGE
LIG_APCC_ABBA_1
0.7222
p.Y399C
DO48121
THCA
ICGC
LDMYGE
LIG_APCC_ABBA_1
0.7222
p.K398R
DO52645
BOCA
ICGC
LDMYGE
LIG_APCC_ABBA_1
0.75
p.P401Q
DO228948
LICA
ICGC
LDMYGE
LIG_APCC_ABBA_1
0.2222
Drug responses associated with AP3M1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LDMYGE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P53677
AP-3 complex subunit mu-2
LIG_APCC_ABBA_1
392:397
LDMYGE
APC,CDC20,FZR1
0.6284
More...
Q9Y2T2
AP-3 complex subunit mu-1
LIG_APCC_ABBA_1
392:397
LDMYGE
APC,CDC20,FZR1
0.5068
More...