DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LPPYQD
Uniprot ID:
P43699
Source protein:
Homeobox protein Nkx-2.1
Source gene:
NKX2-1
Class:
LIG_APCC_ABBA_1
Location:
97:102
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8332
ASA_SCORE:
40.2167
COIL:
0.8308
CONS_SCORE:
0.4973
DSS_SCORE:
0.5174
HELIX:
0.1193
FCONS_SCORE:
0.9883
RIG_SCORE:
0.7487
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S109L
TCGA-98-A53J
LUSC
TCGA
LPPYQD
LIG_APCC_ABBA_1
0.1389
p.A87T
TCGA-FU-A3HZ
CESC
TCGA
LPPYQD
LIG_APCC_ABBA_1
0.0556
p.A102E
TCGA-YA-A8S7
LIHC
TCGA
LPPYQD
LIG_APCC_ABBA_1
0.7701
p.P98L
DO234250
ESAD
ICGC
LPPYQD
LIG_APCC_ABBA_1
0.6471
p.P98L
DO233767
GACA
ICGC
LPPYQD
LIG_APCC_ABBA_1
0.6471
p.N90T
DO234363
ESAD
ICGC
LPPYQD
LIG_APCC_ABBA_1
0.1389
p.G92C
DO22518
LGG
ICGC
LPPYQD
LIG_APCC_ABBA_1
0.1944
p.P111T
DO229018
LICA
ICGC
LPPYQD
LIG_APCC_ABBA_1
0.0833
p.D102N
DO219201
LUSC
ICGC
LPPYQD
LIG_APCC_ABBA_1
0.6932
p.A112T
SIDM00272
Breast Carcinoma
GDSC
LPPYQD
LIG_APCC_ABBA_1
0.0556
p.A112T
SIDM01617
Endometrial Carcinoma
GDSC
LPPYQD
LIG_APCC_ABBA_1
0.0556
p.G92D
ACH-002166
Skin Cancer
CCLE
LPPYQD
LIG_APCC_ABBA_1
0.1944
p.G92D
MZ7-mel
skin
COSMIC
LPPYQD
LIG_APCC_ABBA_1
0.1944
Drug responses associated with NKX2-1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPPYQD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P43699
Homeobox protein Nkx-2.1
LIG_APCC_ABBA_1
97:102
LPPYQD
APC,CDC20,FZR1
0.8332
More...
Q6ZTR5
Cilia- and flagella-associated protein 47
LIG_APCC_ABBA_1
1453:1458
LPPYQD
APC,CDC20,FZR1
0.6371
More...