DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LPTPALS
Uniprot ID:
Q9H3S7
Source protein:
Tyrosine-protein phosphatase non-receptor type 23
Source gene:
PTPN23
Class:
DEG_SCF_FBW7_1
Location:
540:546
E3 ligase:
FBXW7
DEGRON score:
0.8823
ASA_SCORE:
60.7857
COIL:
0.9491
CONS_SCORE:
0.3101
DSS_SCORE:
0.3975
HELIX:
0.0427
FCONS_SCORE:
0.8555
RIG_SCORE:
0.7054
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A539P
TCGA-2G-AAG9
TGCT
TCGA
LPTPALS
DEG_SCF_FBW7_1
0.3056
p.R537W
TCGA-AN-A0AK
BRCA
TCGA
LPTPALS
DEG_SCF_FBW7_1
0.25
p.A544T
TCGA-AX-A2HC
UCEC
TCGA
LPTPALS
DEG_SCF_FBW7_1
0.6028
p.A539T
TCGA-BR-7851
STAD
TCGA
LPTPALS
DEG_SCF_FBW7_1
0.3056
p.R537L
TCGA-GN-A262
SKCM
TCGA
LPTPALS
DEG_SCF_FBW7_1
0.25
p.Q554P
TCGA-VQ-AA6F
STAD
TCGA
LPTPALS
DEG_SCF_FBW7_1
0.1111
p.E537K
DO2401
BRCA
ICGC
LPTPALS
DEG_SCF_FBW7_1
0.25
p.A538P
DO5752
BRCA
ICGC
LPTPALS
DEG_SCF_FBW7_1
0.2778
p.K544T
DO50931
LICA
ICGC
LPTPALS
DEG_SCF_FBW7_1
0.7306
p.R550K
DO227538
ORCA
ICGC
LPTPALS
DEG_SCF_FBW7_1
0.6667
p.P543L
SIDM00654
Small Cell Lung Carcinoma
GDSC
LPTPALS
DEG_SCF_FBW7_1
0.7582
p.P543L
SIDM00793
Burkitt's Lymphoma
GDSC
LPTPALS
DEG_SCF_FBW7_1
0.7582
Drug responses associated with PTPN23 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPTPALS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00203
AP-3 complex subunit beta-1
DEG_SCF_FBW7_1
833:839
LPTPALS
FBXW7
0.9569
More...
Q9H3S7
Tyrosine-protein phosphatase non-receptor type 23
DEG_SCF_FBW7_1
540:546
LPTPALS
FBXW7
0.8823
More...