DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LPTPSPE
Uniprot ID:
Q13635
Source protein:
Protein patched homolog 1
Source gene:
PTCH1
Class:
DEG_SCF_FBW7_2
Location:
1193:1199
E3 ligase:
FBXW7
DEGRON score:
0.5527
ASA_SCORE:
99.5143
COIL:
0.9571
CONS_SCORE:
0.303
DSS_SCORE:
0.5953
HELIX:
0.0081
FCONS_SCORE:
0.9851
RIG_SCORE:
0.5809
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R1192H
TCGA-AP-A1DM
UCEC
TCGA
LPTPSPE
DEG_SCF_FBW7_2
0.3056
p.R1192H
TCGA-AX-A2HD
UCEC
TCGA
LPTPSPE
DEG_SCF_FBW7_2
0.3056
p.Q1187P
DO52453
COCA
ICGC
LPTPSPE
DEG_SCF_FBW7_2
0.1667
p.V1204A
DO233737
GACA
ICGC
LPTPSPE
DEG_SCF_FBW7_2
0.1944
p.Q1187K
DO229027
LICA
ICGC
LPTPSPE
DEG_SCF_FBW7_2
0.1667
p.V1203A
DO52402
UCEC
ICGC
LPTPSPE
DEG_SCF_FBW7_2
0.2222
p.E1207K
DO41758
UCEC
ICGC
LPTPSPE
DEG_SCF_FBW7_2
0.1111
p.R1206C
SIDM01398
Melanoma
GDSC
LPTPSPE
DEG_SCF_FBW7_2
0.1389
p.R1206C
ACH-000661
Skin Cancer
CCLE
LPTPSPE
DEG_SCF_FBW7_2
0.1389
p.M1209T
ACH-000998
Colon/Colorectal Cancer
CCLE
LPTPSPE
DEG_SCF_FBW7_2
0.0556
p.A1202T
Daudi
haematopoietic_and_lymphoid_tissue
COSMIC
LPTPSPE
DEG_SCF_FBW7_2
0.25
p.T1204P
TE-4
oesophagus
COSMIC
LPTPSPE
DEG_SCF_FBW7_2
0.1944
p.N1184K
RS4-11
haematopoietic_and_lymphoid_tissue
COSMIC
LPTPSPE
DEG_SCF_FBW7_2
0.0833
p.R1187H
HCC1569
breast
COSMIC
LPTPSPE
DEG_SCF_FBW7_2
0.1667
p.G1192E
SNU-175
large_intestine
COSMIC
LPTPSPE
DEG_SCF_FBW7_2
0.3056
Drug responses associated with PTCH1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPTPSPE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P0CG30
Glutathione S-transferase theta-2B
DEG_SCF_FBW7_2
225:231
LPTPSPE
FBXW7
0.9414
More...
Q13635
Protein patched homolog 1
DEG_SCF_FBW7_2
1193:1199
LPTPSPE
FBXW7
0.5527
More...