DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPDDS
Uniprot ID:
Q8WXH2
Source protein:
Junctophilin-3
Source gene:
JPH3
Class:
DEG_SCF_FBW7_1
Location:
470:475
E3 ligase:
FBXW7
DEGRON score:
0.9782
ASA_SCORE:
73.0167
COIL:
0.8502
CONS_SCORE:
0.3222
DSS_SCORE:
0.7569
HELIX:
0.1295
FCONS_SCORE:
1.0327
RIG_SCORE:
0.6239
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K463N
TCGA-43-2581
LUSC
TCGA
LTPDDS
DEG_SCF_FBW7_1
0.25
p.K463N
DO26602
LUSC
ICGC
LTPDDS
DEG_SCF_FBW7_1
0.25
p.A485V
TCGA-CK-6746
COAD
TCGA
LTPDDS
DEG_SCF_FBW7_1
0.0556
p.A485V
DO7938
COAD
ICGC
LTPDDS
DEG_SCF_FBW7_1
0.0556
p.D469Y
TCGA-F5-6814
READ
TCGA
LTPDDS
DEG_SCF_FBW7_1
0.3056
p.D469Y
DO36556
READ
ICGC
LTPDDS
DEG_SCF_FBW7_1
0.3056
p.S468C
TCGA-S5-A6DX
BLCA
TCGA
LTPDDS
DEG_SCF_FBW7_1
0.2778
p.S468C
DO51903
BLCA
ICGC
LTPDDS
DEG_SCF_FBW7_1
0.2778
p.P472T
DO229166
NKTL
ICGC
LTPDDS
DEG_SCF_FBW7_1
0.7031
p.D473N
ACH-000932
Gastric Cancer
CCLE
LTPDDS
DEG_SCF_FBW7_1
0.5821
p.D469N
ACH-001568
Skin Cancer
CCLE
LTPDDS
DEG_SCF_FBW7_1
0.3056
Drug responses associated with JPH3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPDDS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13255
Metabotropic glutamate receptor 1
DEG_SCF_FBW7_1
1137:1142
LTPDDS
FBXW7
0.9004
More...
Q8WXH2
Junctophilin-3
DEG_SCF_FBW7_1
470:475
LTPDDS
FBXW7
0.9782
More...