DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PASTPSTT
Uniprot ID:
Q71F56
Source protein:
Mediator of RNA polymerase II transcription subunit 13-like
Source gene:
MED13L
Class:
DEG_SCF_FBW7_1
Location:
1082:1089
E3 ligase:
FBXW7
DEGRON score:
0.9887
ASA_SCORE:
82.3375
COIL:
0.9536
CONS_SCORE:
0.3208
DSS_SCORE:
0.7353
HELIX:
0.0213
FCONS_SCORE:
1.0602
RIG_SCORE:
0.5792
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A1083T
TCGA-A5-A0G2
UCEC
TCGA
PASTPSTT
DEG_SCF_FBW7_1
0.6028
p.A1083T
DO41235
UCEC
ICGC
PASTPSTT
DEG_SCF_FBW7_1
0.6028
p.D1078N
TCGA-BS-A0UV
UCEC
TCGA
PASTPSTT
DEG_SCF_FBW7_1
0.2222
p.D1078N
DO232761
PBCA
ICGC
PASTPSTT
DEG_SCF_FBW7_1
0.2222
p.D1078N
DO42793
UCEC
ICGC
PASTPSTT
DEG_SCF_FBW7_1
0.2222
p.D1078N
ACH-001132
Lymphoma
CCLE
PASTPSTT
DEG_SCF_FBW7_1
0.2222
p.P1086L
TCGA-FS-A1ZF
SKCM
TCGA
PASTPSTT
DEG_SCF_FBW7_1
0.7582
p.P1086L
DO38039
SKCM
ICGC
PASTPSTT
DEG_SCF_FBW7_1
0.7582
p.N1093S
TCGA-HU-A4H3
STAD
TCGA
PASTPSTT
DEG_SCF_FBW7_1
0.2222
p.N1093S
DO47903
STAD
ICGC
PASTPSTT
DEG_SCF_FBW7_1
0.2222
p.L1092F
DO229462
SKCA
ICGC
PASTPSTT
DEG_SCF_FBW7_1
0.25
p.V1072I
SIDM00284
Melanoma
GDSC
PASTPSTT
DEG_SCF_FBW7_1
0.0556
p.S1076N
SIDM00145
T-Lymphoblastic Leukemia
GDSC
PASTPSTT
DEG_SCF_FBW7_1
0.1667
p.S1076N
ACH-001127
Leukemia
CCLE
PASTPSTT
DEG_SCF_FBW7_1
0.1667
p.S1076N
MOLT-4
haematopoietic_and_lymphoid_tissue
COSMIC
PASTPSTT
DEG_SCF_FBW7_1
0.1667
p.T1085P
DB
haematopoietic_and_lymphoid_tissue
COSMIC
PASTPSTT
DEG_SCF_FBW7_1
0.7031
p.T1085P
SCC90
upper_aerodigestive_tract
COSMIC
PASTPSTT
DEG_SCF_FBW7_1
0.7031
Drug responses associated with MED13L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PASTPSTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P98088
Mucin-5AC
DEG_SCF_FBW7_1
4115:4122
PASTPSTT
FBXW7
0.9148
More...
Q71F56
Mediator of RNA polymerase II transcription subunit 13-like
DEG_SCF_FBW7_1
1082:1089
PASTPSTT
FBXW7
0.9887
More...