DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PRKYLRSVG
Uniprot ID:
P16989
Source protein:
Y-box-binding protein 3
Source gene:
YBX3
Class:
DEG_APCC_DBOX_1
Location:
128:136
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9571
ASA_SCORE:
68.5222
COIL:
0.5938
CONS_SCORE:
0.6277
DSS_SCORE:
0.434
HELIX:
0.0494
FCONS_SCORE:
0.846
RIG_SCORE:
0.7573
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G136R
TCGA-70-6723
LUSC
TCGA
PRKYLRSVG
DEG_APCC_DBOX_1
0.6457
p.G136R
DO26882
LUSC
ICGC
PRKYLRSVG
DEG_APCC_DBOX_1
0.6457
p.E139K
TCGA-77-7337
LUSC
TCGA
PRKYLRSVG
DEG_APCC_DBOX_1
0.25
p.E139K
DO27445
LUSC
ICGC
PRKYLRSVG
DEG_APCC_DBOX_1
0.25
p.R129Q
TCGA-AX-A2HC
UCEC
TCGA
PRKYLRSVG
DEG_APCC_DBOX_1
0.7329
p.R129Q
DO41572
UCEC
ICGC
PRKYLRSVG
DEG_APCC_DBOX_1
0.7329
p.V145A
TCGA-VQ-A8P2
STAD
TCGA
PRKYLRSVG
DEG_APCC_DBOX_1
0.0833
p.V145A
DO51761
STAD
ICGC
PRKYLRSVG
DEG_APCC_DBOX_1
0.0833
p.D137V
DO234236
ESAD
ICGC
PRKYLRSVG
DEG_APCC_DBOX_1
0.3056
p.R133S
DO228971
LICA
ICGC
PRKYLRSVG
DEG_APCC_DBOX_1
0.6316
p.I123M
SIDM00352
Ovarian Carcinoma
GDSC
PRKYLRSVG
DEG_APCC_DBOX_1
0.1944
p.I123M
ACH-000719
Ovarian Cancer
CCLE
PRKYLRSVG
DEG_APCC_DBOX_1
0.1944
p.I123M
RMG-I
ovary
COSMIC
PRKYLRSVG
DEG_APCC_DBOX_1
0.1944
p.N127S
ACH-001786
Colon/Colorectal Cancer
CCLE
PRKYLRSVG
DEG_APCC_DBOX_1
0.3056
Drug responses associated with YBX3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PRKYLRSVG
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P16989
Y-box-binding protein 3
DEG_APCC_DBOX_1
128:136
PRKYLRSVG
APC,CDC20,FZR1
0.9571
More...
P67809
Y-box-binding protein 1
DEG_APCC_DBOX_1
96:104
PRKYLRSVG
APC,CDC20,FZR1
0.9781
More...