DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PRKYLRSVG
Uniprot ID:
P67809
Source protein:
Y-box-binding protein 1
Source gene:
YBX1
Class:
DEG_APCC_DBOX_1
Location:
96:104
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9781
ASA_SCORE:
70.6667
COIL:
0.6224
CONS_SCORE:
0.6442
DSS_SCORE:
0.4307
HELIX:
0.046
FCONS_SCORE:
0.86
RIG_SCORE:
0.7582
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R101C
TCGA-22-5477
LUSC
TCGA
PRKYLRSVG
DEG_APCC_DBOX_1
0.719
p.R101C
TCGA-EY-A549
UCEC
TCGA
PRKYLRSVG
DEG_APCC_DBOX_1
0.719
p.R101C
DO26894
LUSC
ICGC
PRKYLRSVG
DEG_APCC_DBOX_1
0.719
p.R101C
DO48174
UCEC
ICGC
PRKYLRSVG
DEG_APCC_DBOX_1
0.719
p.A90V
TCGA-A8-A09Z
BRCA
TCGA
PRKYLRSVG
DEG_APCC_DBOX_1
0.1667
p.A90V
DO5521
BRCA
ICGC
PRKYLRSVG
DEG_APCC_DBOX_1
0.1667
p.R97M
TCGA-DF-A2KN
UCEC
TCGA
PRKYLRSVG
DEG_APCC_DBOX_1
0.8632
p.R97M
DO223282
UCEC
ICGC
PRKYLRSVG
DEG_APCC_DBOX_1
0.8632
p.D105G
DO23504
LINC
ICGC
PRKYLRSVG
DEG_APCC_DBOX_1
0.3056
p.S102I
SIDM00373
Endometrial Carcinoma
GDSC
PRKYLRSVG
DEG_APCC_DBOX_1
0.7341
p.S102I
ACH-000974
Endometrial/Uterine Cancer
CCLE
PRKYLRSVG
DEG_APCC_DBOX_1
0.7341
p.I91V
SIDM00567
Other Solid Cancers
GDSC
PRKYLRSVG
DEG_APCC_DBOX_1
0.1944
p.I91V
ACH-000776
Brain Cancer
CCLE
PRKYLRSVG
DEG_APCC_DBOX_1
0.1944
p.I91V
ONS-76
central_nervous_system
COSMIC
PRKYLRSVG
DEG_APCC_DBOX_1
0.1944
p.N95I
SIDM00628
Breast Carcinoma
GDSC
PRKYLRSVG
DEG_APCC_DBOX_1
0.3056
p.N95I
ACH-000849
Breast Cancer
CCLE
PRKYLRSVG
DEG_APCC_DBOX_1
0.3056
p.N95I
MDA-MB-468
breast
COSMIC
PRKYLRSVG
DEG_APCC_DBOX_1
0.3056
Drug responses associated with YBX1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PRKYLRSVG
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P16989
Y-box-binding protein 3
DEG_APCC_DBOX_1
128:136
PRKYLRSVG
APC,CDC20,FZR1
0.9571
More...
P67809
Y-box-binding protein 1
DEG_APCC_DBOX_1
96:104
PRKYLRSVG
APC,CDC20,FZR1
0.9781
More...