DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENM
Uniprot ID:
Q2VYF4
Source protein:
LETM1 domain-containing protein LETM2, mitochondrial
Source gene:
LETM2
Class:
DEG_APCC_KENBOX_2
Location:
422:426
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9329
ASA_SCORE:
100.28
COIL:
0.5884
CONS_SCORE:
0.5242
DSS_SCORE:
0.4596
HELIX:
0.3216
FCONS_SCORE:
1.2474
RIG_SCORE:
0.7578
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T433M
TCGA-AG-4009
READ
TCGA
SKENM
DEG_APCC_KENBOX_2
0.1389
p.P417S
TCGA-AX-A1CE
UCEC
TCGA
SKENM
DEG_APCC_KENBOX_2
0.1944
p.P417S
DO42280
UCEC
ICGC
SKENM
DEG_APCC_KENBOX_2
0.1944
p.E423K
TCGA-CA-6717
COAD
TCGA
SKENM
DEG_APCC_KENBOX_2
0.7022
p.E423K
TCGA-UE-A6QU
SARC
TCGA
SKENM
DEG_APCC_KENBOX_2
0.7022
p.Q427R
TCGA-Z4-A9VC
SARC
TCGA
SKENM
DEG_APCC_KENBOX_2
0.3056
Drug responses associated with LETM2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENM
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5BKX8
Caveolae-associated protein 4
DEG_APCC_KENBOX_2
203:207
SKENM
APC,CDC20,FZR1
0.9029
More...
Q2VYF4
LETM1 domain-containing protein LETM2, mitochondrial
DEG_APCC_KENBOX_2
422:426
SKENM
APC,CDC20,FZR1
0.9329
More...