DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENM
Uniprot ID:
Q5BKX8
Source protein:
Caveolae-associated protein 4
Source gene:
CAVIN4
Class:
DEG_APCC_KENBOX_2
Location:
203:207
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9029
ASA_SCORE:
94.84
COIL:
0.3096
CONS_SCORE:
0.9411
DSS_SCORE:
0.5746
HELIX:
0.6852
FCONS_SCORE:
1.2164
RIG_SCORE:
0.7176
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S203Y
SIDM00789
Colorectal Carcinoma
GDSC
SKENM
DEG_APCC_KENBOX_2
0.6009
p.S203Y
HCT-15
large_intestine
COSMIC
SKENM
DEG_APCC_KENBOX_2
0.6009
p.D196A
SIDM00193
Colorectal Carcinoma
GDSC
SKENM
DEG_APCC_KENBOX_2
0.1389
p.D196A
SNU-81
large_intestine
COSMIC
SKENM
DEG_APCC_KENBOX_2
0.1389
p.K209N
SIDM00589
Oral Cavity Carcinoma
GDSC
SKENM
DEG_APCC_KENBOX_2
0.2778
p.K209N
HSC-3
upper_aerodigestive_tract
COSMIC
SKENM
DEG_APCC_KENBOX_2
0.2778
Drug responses associated with CAVIN4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENM
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5BKX8
Caveolae-associated protein 4
DEG_APCC_KENBOX_2
203:207
SKENM
APC,CDC20,FZR1
0.9029
More...
Q2VYF4
LETM1 domain-containing protein LETM2, mitochondrial
DEG_APCC_KENBOX_2
422:426
SKENM
APC,CDC20,FZR1
0.9329
More...