DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VRVFEE
Uniprot ID:
P98161
Source protein:
Polycystin-1
Source gene:
PKD1
Class:
LIG_APCC_ABBA_1
Location:
1206:1211
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8618
ASA_SCORE:
55.8833
COIL:
0.1708
CONS_SCORE:
0.3328
DSS_SCORE:
0.1625
HELIX:
0.0097
FCONS_SCORE:
0.8833
RIG_SCORE:
0.9165
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T1196M
TCGA-A5-A2K3
UCEC
TCGA
VRVFEE
LIG_APCC_ABBA_1
0.0556
p.T1196M
DO43899
UCEC
ICGC
VRVFEE
LIG_APCC_ABBA_1
0.0556
p.R1207C
DO233791
GACA
ICGC
VRVFEE
LIG_APCC_ABBA_1
0.719
p.F1209I
DO47124
RECA
ICGC
VRVFEE
LIG_APCC_ABBA_1
0.7415
p.G1199S
SIDM00410
Other Blood Cancers
GDSC
VRVFEE
LIG_APCC_ABBA_1
0.1389
p.G1199S
ACH-002317
Leukemia
CCLE
VRVFEE
LIG_APCC_ABBA_1
0.1389
p.G1199S
YT
haematopoietic_and_lymphoid_tissue
COSMIC
VRVFEE
LIG_APCC_ABBA_1
0.1389
p.S1216G
SIDM00479
Esophageal Carcinoma
GDSC
VRVFEE
LIG_APCC_ABBA_1
0.1944
p.S1216G
ACH-000679
Esophageal Cancer
CCLE
VRVFEE
LIG_APCC_ABBA_1
0.1944
p.R1213H
SIDM00780
Colorectal Carcinoma
GDSC
VRVFEE
LIG_APCC_ABBA_1
0.2778
p.R1213H
ACH-000967
Colon/Colorectal Cancer
CCLE
VRVFEE
LIG_APCC_ABBA_1
0.2778
p.L1212P
ACH-000978
Endometrial/Uterine Cancer
CCLE
VRVFEE
LIG_APCC_ABBA_1
0.3056
Drug responses associated with PKD1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRVFEE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P98161
Polycystin-1
LIG_APCC_ABBA_1
1206:1211
VRVFEE
APC,CDC20,FZR1
0.8618
More...
Q9C073
Protein FAM117A
LIG_APCC_ABBA_1
347:352
VRVFEE
APC,CDC20,FZR1
0.9837
More...