DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VTPKQS
Uniprot ID:
Q16363
Source protein:
Laminin subunit alpha-4
Source gene:
LAMA4
Class:
DEG_SCF_FBW7_1
Location:
1720:1725
E3 ligase:
FBXW7
DEGRON score:
0.9278
ASA_SCORE:
72.05
COIL:
0.717
CONS_SCORE:
0.4624
DSS_SCORE:
0.3275
HELIX:
0.0565
FCONS_SCORE:
0.9999
RIG_SCORE:
0.7947
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L1726I
TCGA-A5-A1OF
UCEC
TCGA
VTPKQS
DEG_SCF_FBW7_1
0.3056
p.C1727R
TCGA-CU-A72E
BLCA
TCGA
VTPKQS
DEG_SCF_FBW7_1
0.2778
p.V1720F
TCGA-FS-A1ZR
SKCM
TCGA
VTPKQS
DEG_SCF_FBW7_1
0.7068
p.C1720R
DO49734
BLCA
ICGC
VTPKQS
DEG_SCF_FBW7_1
0.8301
p.H1725N
DO229025
LICA
ICGC
VTPKQS
DEG_SCF_FBW7_1
0.7423
p.T1714K
DO229036
LICA
ICGC
VTPKQS
DEG_SCF_FBW7_1
0.1667
p.V1713F
DO37651
SKCM
ICGC
VTPKQS
DEG_SCF_FBW7_1
0.1389
p.R1731I
DO37444
SKCM
ICGC
VTPKQS
DEG_SCF_FBW7_1
0.1667
p.L1719I
DO42568
UCEC
ICGC
VTPKQS
DEG_SCF_FBW7_1
0.3056
Drug responses associated with LAMA4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VTPKQS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q16363
Laminin subunit alpha-4
DEG_SCF_FBW7_1
1720:1725
VTPKQS
FBXW7
0.9278
More...
Q16787
Laminin subunit alpha-3
DEG_SCF_FBW7_1
3230:3235
VTPKQS
FBXW7
0.5313
More...