DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VTPKQS
Uniprot ID:
Q16787
Source protein:
Laminin subunit alpha-3
Source gene:
LAMA3
Class:
DEG_SCF_FBW7_1
Location:
3230:3235
E3 ligase:
FBXW7
DEGRON score:
0.5313
ASA_SCORE:
73.7833
COIL:
0.7793
CONS_SCORE:
0.3223
DSS_SCORE:
0.4374
HELIX:
0.0278
FCONS_SCORE:
0.8535
RIG_SCORE:
0.7414
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S3229L
TCGA-86-8358
LUAD
TCGA
VTPKQS
DEG_SCF_FBW7_1
0.3056
p.S3229L
DO25471
LUAD
ICGC
VTPKQS
DEG_SCF_FBW7_1
0.3056
p.D3220N
TCGA-AA-3685
COAD
TCGA
VTPKQS
DEG_SCF_FBW7_1
0.0556
p.D3220N
DO8047
COAD
ICGC
VTPKQS
DEG_SCF_FBW7_1
0.0556
p.P3232A
TCGA-BR-8483
STAD
TCGA
VTPKQS
DEG_SCF_FBW7_1
0.7503
p.P3232A
DO47821
STAD
ICGC
VTPKQS
DEG_SCF_FBW7_1
0.7503
p.L3236M
TCGA-FS-A1Z0
SKCM
TCGA
VTPKQS
DEG_SCF_FBW7_1
0.3056
p.L3236M
DO37431
SKCM
ICGC
VTPKQS
DEG_SCF_FBW7_1
0.3056
p.T3233M
SJSA-1
bone
COSMIC
VTPKQS
DEG_SCF_FBW7_1
0.7423
Drug responses associated with LAMA3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VTPKQS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q16363
Laminin subunit alpha-4
DEG_SCF_FBW7_1
1720:1725
VTPKQS
FBXW7
0.9278
More...
Q16787
Laminin subunit alpha-3
DEG_SCF_FBW7_1
3230:3235
VTPKQS
FBXW7
0.5313
More...