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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: SLITRK1

Summary

GeneID

114798

Symbol

SLITRK1

Synonyms

FLJ54428|KIAA0918|KIAA1910|LRRC12|RP11-395N17.1

Description

SLIT and NTRK-like family, member 1

Locus tag

Gene type

protein-coding

Map location

13q31.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007409

axonogenesis

IEA

neuron, axon, neurite (GO term level: 12)

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_DN	428	306	All SZGR genes in this pathway
SCHAEFFER_SOX9_TARGETS_IN_PROSTATE_DEVELOPMENT_DN	45	33	All SZGR genes in this pathway
BENPORATH_SUZ12_TARGETS	1038	678	All SZGR genes in this pathway
BENPORATH_EED_TARGETS	1062	725	All SZGR genes in this pathway
BENPORATH_ES_WITH_H3K27ME3	1118	744	All SZGR genes in this pathway
BENPORATH_PRC2_TARGETS	652	441	All SZGR genes in this pathway
IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR	532	309	All SZGR genes in this pathway
ZHENG_IL22_SIGNALING_UP	56	36	All SZGR genes in this pathway
BEIER_GLIOMA_STEM_CELL_UP	39	17	All SZGR genes in this pathway
MIKKELSEN_MEF_ICP_WITH_H3K27ME3	206	108	All SZGR genes in this pathway
MIKKELSEN_ES_ICP_WITH_H3K4ME3_AND_H3K27ME3	137	85	All SZGR genes in this pathway
MIKKELSEN_NPC_ICP_WITH_H3K4ME3	445	257	All SZGR genes in this pathway
MARTENS_TRETINOIN_RESPONSE_UP	857	456	All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_VIA_TP53_GROUP_A	898	516	All SZGR genes in this pathway
BAKKER_FOXO3_TARGETS_DN	187	109	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-103/107	512	518	1A	hsa-miR-103^brain	AGCAGCAUUGUACAGGGCUAUGA
				hsa-miR-107^brain	AGCAGCAUUGUACAGGGCUAUCA
				hsa-miR-103^brain	AGCAGCAUUGUACAGGGCUAUGA
				hsa-miR-107^brain	AGCAGCAUUGUACAGGGCUAUCA
miR-128	714	720	1A	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
miR-128	714	720	1A	hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
miR-145	1484	1490	1A	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-15/16/195/424/497	1661	1667	m8	hsa-miR-15a^brain	UAGCAGCACAUAAUGGUUUGUG
				hsa-miR-16^brain	UAGCAGCACGUAAAUAUUGGCG
				hsa-miR-15b^brain	UAGCAGCACAUCAUGGUUUACA
				hsa-miR-195^SZ	UAGCAGCACAGAAAUAUUGGC
				hsa-miR-424	CAGCAGCAAUUCAUGUUUUGAA
				hsa-miR-497	CAGCAGCACACUGUGGUUUGU
miR-181	916	923	1A,m8	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
				hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-183	663	669	m8	hsa-miR-183	UAUGGCACUGGUAGAAUUCACUG
miR-190	892	898	m8	hsa-miR-190	UGAUAUGUUUGAUAUAUUAGGU
miR-200bc/429	1150	1157	1A,m8	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-214	1687	1693	1A	hsa-miR-214^brain	ACAGCAGGCACAGACAGGCAG
miR-24*	690	696	m8	hsa-miR-189	GUGCCUACUGAGCUGAUAUCAGU
miR-27	714	721	1A,m8	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	714	721	1A,m8	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-30-3p	1690	1696	1A	hsa-miR-30a-3p	CUUUCAGUCGGAUGUUUGCAGC
miR-30-3p	1690	1696	1A	hsa-miR-30e-3p	CUUUCAGUCGGAUGUUUACAGC
miR-361	607	613	1A	hsa-miR-361^brain	UUAUCAGAAUCUCCAGGGGUAC
miR-369-3p	944	950	1A	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
miR-374	944	950	m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
miR-496	726	732	1A	hsa-miR-496	AUUACAUGGCCAAUCUC
miR-496	726	732	1A	hsa-miR-496	AUUACAUGGCCAAUCUC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.