| BCAR1 | CAS | CAS1 | CASS1 | CRKAS | P130Cas | breast cancer anti-estrogen resistance 1 | Two-hybrid | BioGRID | 16169070 |
| LSM1 | CASM | YJL124C | LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) | Two-hybrid | BioGRID | 15231747 |
| MARK3 | CTAK1 | KP78 | PAR1A | MAP/microtubule affinity-regulating kinase 3 | Two-hybrid | BioGRID | 16169070 |
| STX1A | HPC-1 | STX1 | p35-1 | syntaxin 1A (brain) | VPS11 interacts with STX1A (Syntaxin-1). This interaction was modeled on a demonstrated interaction between human VPS11 and STX1A (Syntaxin-1) from an unspecified species. | BIND | 14623309 |
| STX6 | - | syntaxin 6 | Vps11 interacts with Stx6 (Syntaxin-6). This interaction was modeled on a demonstrated interaction between human Vps11 and Stx6 (Syntaxin-6) from an unspecified species. | BIND | 14623309 |
| STX7 | - | syntaxin 7 | VPS11 interacts with STX7 (Syntaxin-7). This interaction was modeled on a demonstrated interaction between human VPS11 and STX7 (Syntaxin-7) from an unspecified species. | BIND | 14623309 |
| - | HPRD,BioGRID | 11382755 |
| STX8 | CARB | syntaxin 8 | VPS11 interacts with STX8 (Syntaxin-8). This interaction was modeled on a demonstrated interaction between human VPS11 and STX8 (Syntaxin-8) from an unspecified species. | BIND | 14623309 |
| VPS16 | hVPS16 | vacuolar protein sorting 16 homolog (S. cerevisiae) | - | HPRD,BioGRID | 11382755 |
| VPS18 | KIAA1475 | PEP3 | vacuolar protein sorting 18 homolog (S. cerevisiae) | - | HPRD,BioGRID | 11382755 |
| VPS33A | FLJ22395 | FLJ23187 | vacuolar protein sorting 33 homolog A (S. cerevisiae) | - | HPRD,BioGRID | 11382755 |
| VPS45 | H1 | H1VPS45 | VPS45A | VPS45B | VPS54A | VSP45 | VSP45A | vacuolar protein sorting 45 homolog (S. cerevisiae) | VPS11 interacts with VPS45A (VPS45). This interaction was modeled on a demonstrated interaction between human VPS11 and rat VPS45. | BIND | 14623309 |
