Gene Page: IL1RL1
Summary ?
GeneID | 9173 |
Symbol | IL1RL1 |
Synonyms | DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 |
Description | interleukin 1 receptor like 1 |
Reference | MIM:601203|HGNC:HGNC:5998|Ensembl:ENSG00000115602|HPRD:03123|Vega:OTTHUMG00000130782 |
Gene type | protein-coding |
Map location | 2q12 |
Fetal beta | -0.127 |
eGene | Anterior cingulate cortex BA24 Caudate basal ganglia Cerebellar Hemisphere Cerebellum Cortex Frontal Cortex BA9 Hippocampus Nucleus accumbens basal ganglia Putamen basal ganglia Meta |
Gene in Data Sources
Gene set name | Method of gene set | Description | Info |
---|---|---|---|
CV:GWASdb | Genome-wide Association Studies | GWASdb records for schizophrenia | |
CV:PGCnp | Genome-wide Association Study | GWAS | |
GSMA_I | Genome scan meta-analysis | Psr: 0.0004 |
Section I. Genetics and epigenetics annotation
eQTL annotation
SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
---|---|---|---|---|---|---|---|---|
rs1115282 | 2 | 102890970 | IL1RL1 | ENSG00000115602.12 | 1.482E-6 | 0 | -38399 | gtex_brain_ba24 |
rs11123917 | 2 | 102891649 | IL1RL1 | ENSG00000115602.12 | 1.466E-6 | 0 | -37720 | gtex_brain_ba24 |
rs11683213 | 2 | 102904244 | IL1RL1 | ENSG00000115602.12 | 9.108E-7 | 0 | -25125 | gtex_brain_ba24 |
rs1420091 | 2 | 102917234 | IL1RL1 | ENSG00000115602.12 | 2.669E-9 | 0 | -12135 | gtex_brain_ba24 |
rs4399750 | 2 | 102917788 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | -11581 | gtex_brain_ba24 |
rs2110660 | 2 | 102918601 | IL1RL1 | ENSG00000115602.12 | 1.04E-9 | 0 | -10768 | gtex_brain_ba24 |
rs35727090 | 2 | 102918925 | IL1RL1 | ENSG00000115602.12 | 3.071E-9 | 0 | -10444 | gtex_brain_ba24 |
rs200094563 | 2 | 102918931 | IL1RL1 | ENSG00000115602.12 | 1.635E-8 | 0 | -10438 | gtex_brain_ba24 |
rs1420090 | 2 | 102919305 | IL1RL1 | ENSG00000115602.12 | 2.963E-9 | 0 | -10064 | gtex_brain_ba24 |
rs7565653 | 2 | 102919426 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | -9943 | gtex_brain_ba24 |
rs7568913 | 2 | 102920037 | IL1RL1 | ENSG00000115602.12 | 9.885E-10 | 0 | -9332 | gtex_brain_ba24 |
rs10179654 | 2 | 102921783 | IL1RL1 | ENSG00000115602.12 | 9.388E-10 | 0 | -7586 | gtex_brain_ba24 |
rs4090473 | 2 | 102922987 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | -6382 | gtex_brain_ba24 |
rs67627960 | 2 | 102923677 | IL1RL1 | ENSG00000115602.12 | 2.224E-8 | 0 | -5692 | gtex_brain_ba24 |
rs11683957 | 2 | 102923821 | IL1RL1 | ENSG00000115602.12 | 1.17E-9 | 0 | -5548 | gtex_brain_ba24 |
rs12476925 | 2 | 102924549 | IL1RL1 | ENSG00000115602.12 | 7.474E-10 | 0 | -4820 | gtex_brain_ba24 |
rs12476968 | 2 | 102924662 | IL1RL1 | ENSG00000115602.12 | 7.545E-10 | 0 | -4707 | gtex_brain_ba24 |
rs6721346 | 2 | 102926320 | IL1RL1 | ENSG00000115602.12 | 7.474E-10 | 0 | -3049 | gtex_brain_ba24 |
rs10178436 | 2 | 102926511 | IL1RL1 | ENSG00000115602.12 | 7.474E-10 | 0 | -2858 | gtex_brain_ba24 |
rs11679191 | 2 | 102926800 | IL1RL1 | ENSG00000115602.12 | 7.508E-10 | 0 | -2569 | gtex_brain_ba24 |
rs11685424 | 2 | 102926981 | IL1RL1 | ENSG00000115602.12 | 7.474E-10 | 0 | -2388 | gtex_brain_ba24 |
rs11685480 | 2 | 102927086 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | -2283 | gtex_brain_ba24 |
rs6733174 | 2 | 102929012 | IL1RL1 | ENSG00000115602.12 | 7.474E-10 | 0 | -357 | gtex_brain_ba24 |
rs6543118 | 2 | 102929469 | IL1RL1 | ENSG00000115602.12 | 7.474E-10 | 0 | 100 | gtex_brain_ba24 |
rs1558622 | 2 | 102930147 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 778 | gtex_brain_ba24 |
rs1558621 | 2 | 102930307 | IL1RL1 | ENSG00000115602.12 | 7.465E-10 | 0 | 938 | gtex_brain_ba24 |
rs10189202 | 2 | 102930380 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 1011 | gtex_brain_ba24 |
rs34646353 | 2 | 102930605 | IL1RL1 | ENSG00000115602.12 | 3.322E-8 | 0 | 1236 | gtex_brain_ba24 |
rs10191914 | 2 | 102930657 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 1288 | gtex_brain_ba24 |
rs10189711 | 2 | 102930881 | IL1RL1 | ENSG00000115602.12 | 7.474E-10 | 0 | 1512 | gtex_brain_ba24 |
rs12712135 | 2 | 102930948 | IL1RL1 | ENSG00000115602.12 | 7.474E-10 | 0 | 1579 | gtex_brain_ba24 |
rs1558620 | 2 | 102931395 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 2026 | gtex_brain_ba24 |
rs1558619 | 2 | 102931550 | IL1RL1 | ENSG00000115602.12 | 7.474E-10 | 0 | 2181 | gtex_brain_ba24 |
rs12996505 | 2 | 102931802 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 2433 | gtex_brain_ba24 |
rs13020793 | 2 | 102931926 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 2557 | gtex_brain_ba24 |
rs10183388 | 2 | 102932247 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 2878 | gtex_brain_ba24 |
rs953934 | 2 | 102932293 | IL1RL1 | ENSG00000115602.12 | 6.343E-9 | 0 | 2924 | gtex_brain_ba24 |
rs1968171 | 2 | 102933552 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 4183 | gtex_brain_ba24 |
rs4613307 | 2 | 102933758 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 4389 | gtex_brain_ba24 |
rs1968170 | 2 | 102933802 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 4433 | gtex_brain_ba24 |
rs11123918 | 2 | 102935237 | IL1RL1 | ENSG00000115602.12 | 2.986E-9 | 0 | 5868 | gtex_brain_ba24 |
rs10182639 | 2 | 102935805 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 6436 | gtex_brain_ba24 |
rs11690443 | 2 | 102936131 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 6762 | gtex_brain_ba24 |
rs12712136 | 2 | 102936366 | IL1RL1 | ENSG00000115602.12 | 1.187E-8 | 0 | 6997 | gtex_brain_ba24 |
rs974389 | 2 | 102936981 | IL1RL1 | ENSG00000115602.12 | 6.343E-9 | 0 | 7612 | gtex_brain_ba24 |
rs4142132 | 2 | 102937482 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 8113 | gtex_brain_ba24 |
rs971764 | 2 | 102938335 | IL1RL1 | ENSG00000115602.12 | 6.343E-9 | 0 | 8966 | gtex_brain_ba24 |
rs1420088 | 2 | 102939434 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 10065 | gtex_brain_ba24 |
rs11123920 | 2 | 102939833 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 10464 | gtex_brain_ba24 |
rs6706844 | 2 | 102940412 | IL1RL1 | ENSG00000115602.12 | 6.347E-9 | 0 | 11043 | gtex_brain_ba24 |
rs11674832 | 2 | 102940999 | IL1RL1 | ENSG00000115602.12 | 2.456E-6 | 0 | 11630 | gtex_brain_ba24 |
rs11675988 | 2 | 102941019 | IL1RL1 | ENSG00000115602.12 | 1.841E-6 | 0 | 11650 | gtex_brain_ba24 |
rs11679900 | 2 | 102941074 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 11705 | gtex_brain_ba24 |
rs11676075 | 2 | 102941215 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 11846 | gtex_brain_ba24 |
rs11676124 | 2 | 102941338 | IL1RL1 | ENSG00000115602.12 | 1.834E-6 | 0 | 11969 | gtex_brain_ba24 |
rs11123921 | 2 | 102941561 | IL1RL1 | ENSG00000115602.12 | 2.788E-9 | 0 | 12192 | gtex_brain_ba24 |
rs76520363 | 2 | 102945241 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 15872 | gtex_brain_ba24 |
rs76278109 | 2 | 102945378 | IL1RL1 | ENSG00000115602.12 | 1.911E-7 | 0 | 16009 | gtex_brain_ba24 |
rs76886731 | 2 | 102945416 | IL1RL1 | ENSG00000115602.12 | 8.213E-8 | 0 | 16047 | gtex_brain_ba24 |
rs150341880 | 2 | 102945755 | IL1RL1 | ENSG00000115602.12 | 3.693E-9 | 0 | 16386 | gtex_brain_ba24 |
rs138087973 | 2 | 102946082 | IL1RL1 | ENSG00000115602.12 | 1.489E-8 | 0 | 16713 | gtex_brain_ba24 |
rs76498201 | 2 | 102946111 | IL1RL1 | ENSG00000115602.12 | 2.012E-8 | 0 | 16742 | gtex_brain_ba24 |
rs12996772 | 2 | 102947201 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 17832 | gtex_brain_ba24 |
rs1420102 | 2 | 102948819 | IL1RL1 | ENSG00000115602.12 | 6.343E-9 | 0 | 19450 | gtex_brain_ba24 |
rs12466380 | 2 | 102948939 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 19570 | gtex_brain_ba24 |
rs12712140 | 2 | 102951062 | IL1RL1 | ENSG00000115602.12 | 2.919E-9 | 0 | 21693 | gtex_brain_ba24 |
rs1997467 | 2 | 102951073 | IL1RL1 | ENSG00000115602.12 | 2.789E-9 | 0 | 21704 | gtex_brain_ba24 |
rs1997466 | 2 | 102951467 | IL1RL1 | ENSG00000115602.12 | 2.788E-9 | 0 | 22098 | gtex_brain_ba24 |
rs1362350 | 2 | 102951798 | IL1RL1 | ENSG00000115602.12 | 2.797E-9 | 0 | 22429 | gtex_brain_ba24 |
rs67058052 | 2 | 102951850 | IL1RL1 | ENSG00000115602.12 | 3.359E-9 | 0 | 22481 | gtex_brain_ba24 |
rs397969654 | 2 | 102951851 | IL1RL1 | ENSG00000115602.12 | 3.301E-9 | 0 | 22482 | gtex_brain_ba24 |
rs1362349 | 2 | 102951972 | IL1RL1 | ENSG00000115602.12 | 3.255E-9 | 0 | 22603 | gtex_brain_ba24 |
rs12712141 | 2 | 102953067 | IL1RL1 | ENSG00000115602.12 | 1.112E-8 | 0 | 23698 | gtex_brain_ba24 |
rs59247511 | 2 | 102954190 | IL1RL1 | ENSG00000115602.12 | 3.116E-9 | 0 | 24821 | gtex_brain_ba24 |
rs55664618 | 2 | 103016216 | IL1RL1 | ENSG00000115602.12 | 1.563E-7 | 0 | 86847 | gtex_brain_ba24 |
rs11465727 | 2 | 103064503 | IL1RL1 | ENSG00000115602.12 | 5.32E-7 | 0 | 135134 | gtex_brain_ba24 |
rs11465730 | 2 | 103066858 | IL1RL1 | ENSG00000115602.12 | 5.994E-7 | 0 | 137489 | gtex_brain_ba24 |
rs11678721 | 2 | 103073238 | IL1RL1 | ENSG00000115602.12 | 8.884E-7 | 0 | 143869 | gtex_brain_ba24 |
rs11677555 | 2 | 103073293 | IL1RL1 | ENSG00000115602.12 | 5.994E-7 | 0 | 143924 | gtex_brain_ba24 |
rs6728475 | 2 | 103073950 | IL1RL1 | ENSG00000115602.12 | 5.982E-7 | 0 | 144581 | gtex_brain_ba24 |
rs12712150 | 2 | 103074813 | IL1RL1 | ENSG00000115602.12 | 5.817E-7 | 0 | 145444 | gtex_brain_ba24 |
rs6705498 | 2 | 103076670 | IL1RL1 | ENSG00000115602.12 | 5.994E-7 | 0 | 147301 | gtex_brain_ba24 |
rs6719196 | 2 | 103076888 | IL1RL1 | ENSG00000115602.12 | 5.994E-7 | 0 | 147519 | gtex_brain_ba24 |
rs11676236 | 2 | 103081695 | IL1RL1 | ENSG00000115602.12 | 5.994E-7 | 0 | 152326 | gtex_brain_ba24 |
rs11687013 | 2 | 103081721 | IL1RL1 | ENSG00000115602.12 | 5.994E-7 | 0 | 152352 | gtex_brain_ba24 |
rs4140786 | 2 | 103088176 | IL1RL1 | ENSG00000115602.12 | 5.994E-7 | 0 | 158807 | gtex_brain_ba24 |
rs1115282 | 2 | 102890970 | IL1RL1 | ENSG00000115602.12 | 5.141E-6 | 0 | -38399 | gtex_brain_putamen_basal |
rs11123917 | 2 | 102891649 | IL1RL1 | ENSG00000115602.12 | 4.807E-6 | 0 | -37720 | gtex_brain_putamen_basal |
rs11683213 | 2 | 102904244 | IL1RL1 | ENSG00000115602.12 | 2.673E-6 | 0 | -25125 | gtex_brain_putamen_basal |
rs1420091 | 2 | 102917234 | IL1RL1 | ENSG00000115602.12 | 3.697E-9 | 0 | -12135 | gtex_brain_putamen_basal |
rs4399750 | 2 | 102917788 | IL1RL1 | ENSG00000115602.12 | 3.739E-9 | 0 | -11581 | gtex_brain_putamen_basal |
rs2110660 | 2 | 102918601 | IL1RL1 | ENSG00000115602.12 | 6.22E-11 | 0 | -10768 | gtex_brain_putamen_basal |
rs35727090 | 2 | 102918925 | IL1RL1 | ENSG00000115602.12 | 1.591E-8 | 0 | -10444 | gtex_brain_putamen_basal |
rs200094563 | 2 | 102918931 | IL1RL1 | ENSG00000115602.12 | 2.029E-8 | 0 | -10438 | gtex_brain_putamen_basal |
rs1420090 | 2 | 102919305 | IL1RL1 | ENSG00000115602.12 | 9.865E-9 | 0 | -10064 | gtex_brain_putamen_basal |
rs7565653 | 2 | 102919426 | IL1RL1 | ENSG00000115602.12 | 3.734E-9 | 0 | -9943 | gtex_brain_putamen_basal |
rs7568913 | 2 | 102920037 | IL1RL1 | ENSG00000115602.12 | 5.897E-11 | 0 | -9332 | gtex_brain_putamen_basal |
rs10179654 | 2 | 102921783 | IL1RL1 | ENSG00000115602.12 | 5.647E-11 | 0 | -7586 | gtex_brain_putamen_basal |
rs4090473 | 2 | 102922987 | IL1RL1 | ENSG00000115602.12 | 3.723E-9 | 0 | -6382 | gtex_brain_putamen_basal |
rs67627960 | 2 | 102923677 | IL1RL1 | ENSG00000115602.12 | 1.119E-8 | 0 | -5692 | gtex_brain_putamen_basal |
rs12476925 | 2 | 102924549 | IL1RL1 | ENSG00000115602.12 | 5.277E-11 | 0 | -4820 | gtex_brain_putamen_basal |
rs12476968 | 2 | 102924662 | IL1RL1 | ENSG00000115602.12 | 5.277E-11 | 0 | -4707 | gtex_brain_putamen_basal |
rs6721346 | 2 | 102926320 | IL1RL1 | ENSG00000115602.12 | 5.277E-11 | 0 | -3049 | gtex_brain_putamen_basal |
rs10178436 | 2 | 102926511 | IL1RL1 | ENSG00000115602.12 | 5.277E-11 | 0 | -2858 | gtex_brain_putamen_basal |
rs11679191 | 2 | 102926800 | IL1RL1 | ENSG00000115602.12 | 2.025E-11 | 0 | -2569 | gtex_brain_putamen_basal |
rs11685424 | 2 | 102926981 | IL1RL1 | ENSG00000115602.12 | 5.277E-11 | 0 | -2388 | gtex_brain_putamen_basal |
rs11685480 | 2 | 102927086 | IL1RL1 | ENSG00000115602.12 | 3.739E-9 | 0 | -2283 | gtex_brain_putamen_basal |
rs6733174 | 2 | 102929012 | IL1RL1 | ENSG00000115602.12 | 5.246E-11 | 0 | -357 | gtex_brain_putamen_basal |
rs6543118 | 2 | 102929469 | IL1RL1 | ENSG00000115602.12 | 5.264E-11 | 0 | 100 | gtex_brain_putamen_basal |
rs1558622 | 2 | 102930147 | IL1RL1 | ENSG00000115602.12 | 3.734E-9 | 0 | 778 | gtex_brain_putamen_basal |
rs1558621 | 2 | 102930307 | IL1RL1 | ENSG00000115602.12 | 5.272E-11 | 0 | 938 | gtex_brain_putamen_basal |
rs10189202 | 2 | 102930380 | IL1RL1 | ENSG00000115602.12 | 3.736E-9 | 0 | 1011 | gtex_brain_putamen_basal |
rs34646353 | 2 | 102930605 | IL1RL1 | ENSG00000115602.12 | 5.274E-9 | 0 | 1236 | gtex_brain_putamen_basal |
rs10191914 | 2 | 102930657 | IL1RL1 | ENSG00000115602.12 | 3.739E-9 | 0 | 1288 | gtex_brain_putamen_basal |
rs10189711 | 2 | 102930881 | IL1RL1 | ENSG00000115602.12 | 5.277E-11 | 0 | 1512 | gtex_brain_putamen_basal |
rs12712135 | 2 | 102930948 | IL1RL1 | ENSG00000115602.12 | 5.277E-11 | 0 | 1579 | gtex_brain_putamen_basal |
rs1558620 | 2 | 102931395 | IL1RL1 | ENSG00000115602.12 | 3.739E-9 | 0 | 2026 | gtex_brain_putamen_basal |
rs1558619 | 2 | 102931550 | IL1RL1 | ENSG00000115602.12 | 8.541E-11 | 0 | 2181 | gtex_brain_putamen_basal |
rs12996505 | 2 | 102931802 | IL1RL1 | ENSG00000115602.12 | 3.976E-9 | 0 | 2433 | gtex_brain_putamen_basal |
rs13020793 | 2 | 102931926 | IL1RL1 | ENSG00000115602.12 | 3.739E-9 | 0 | 2557 | gtex_brain_putamen_basal |
rs10183388 | 2 | 102932247 | IL1RL1 | ENSG00000115602.12 | 3.739E-9 | 0 | 2878 | gtex_brain_putamen_basal |
rs953934 | 2 | 102932293 | IL1RL1 | ENSG00000115602.12 | 2.409E-9 | 0 | 2924 | gtex_brain_putamen_basal |
rs1968171 | 2 | 102933552 | IL1RL1 | ENSG00000115602.12 | 4.305E-9 | 0 | 4183 | gtex_brain_putamen_basal |
rs4613307 | 2 | 102933758 | IL1RL1 | ENSG00000115602.12 | 1.903E-9 | 0 | 4389 | gtex_brain_putamen_basal |
rs1968170 | 2 | 102933802 | IL1RL1 | ENSG00000115602.12 | 4.466E-9 | 0 | 4433 | gtex_brain_putamen_basal |
rs11123918 | 2 | 102935237 | IL1RL1 | ENSG00000115602.12 | 8.056E-9 | 0 | 5868 | gtex_brain_putamen_basal |
rs10182639 | 2 | 102935805 | IL1RL1 | ENSG00000115602.12 | 9.348E-9 | 0 | 6436 | gtex_brain_putamen_basal |
rs11690443 | 2 | 102936131 | IL1RL1 | ENSG00000115602.12 | 1.004E-8 | 0 | 6762 | gtex_brain_putamen_basal |
rs12712136 | 2 | 102936366 | IL1RL1 | ENSG00000115602.12 | 1.02E-8 | 0 | 6997 | gtex_brain_putamen_basal |
rs974389 | 2 | 102936981 | IL1RL1 | ENSG00000115602.12 | 6.68E-9 | 0 | 7612 | gtex_brain_putamen_basal |
rs4142132 | 2 | 102937482 | IL1RL1 | ENSG00000115602.12 | 1.289E-8 | 0 | 8113 | gtex_brain_putamen_basal |
rs971764 | 2 | 102938335 | IL1RL1 | ENSG00000115602.12 | 8.101E-9 | 0 | 8966 | gtex_brain_putamen_basal |
rs1420088 | 2 | 102939434 | IL1RL1 | ENSG00000115602.12 | 1.557E-8 | 0 | 10065 | gtex_brain_putamen_basal |
rs11123920 | 2 | 102939833 | IL1RL1 | ENSG00000115602.12 | 1.557E-8 | 0 | 10464 | gtex_brain_putamen_basal |
rs6706844 | 2 | 102940412 | IL1RL1 | ENSG00000115602.12 | 8.767E-9 | 0 | 11043 | gtex_brain_putamen_basal |
rs11674832 | 2 | 102940999 | IL1RL1 | ENSG00000115602.12 | 1.414E-6 | 0 | 11630 | gtex_brain_putamen_basal |
rs11679900 | 2 | 102941074 | IL1RL1 | ENSG00000115602.12 | 1.68E-8 | 0 | 11705 | gtex_brain_putamen_basal |
rs11676075 | 2 | 102941215 | IL1RL1 | ENSG00000115602.12 | 1.557E-8 | 0 | 11846 | gtex_brain_putamen_basal |
rs11123921 | 2 | 102941561 | IL1RL1 | ENSG00000115602.12 | 1.557E-8 | 0 | 12192 | gtex_brain_putamen_basal |
rs76520363 | 2 | 102945241 | IL1RL1 | ENSG00000115602.12 | 1.557E-8 | 0 | 15872 | gtex_brain_putamen_basal |
rs76278109 | 2 | 102945378 | IL1RL1 | ENSG00000115602.12 | 9.603E-7 | 0 | 16009 | gtex_brain_putamen_basal |
rs76886731 | 2 | 102945416 | IL1RL1 | ENSG00000115602.12 | 1.01E-7 | 0 | 16047 | gtex_brain_putamen_basal |
rs150341880 | 2 | 102945755 | IL1RL1 | ENSG00000115602.12 | 1.238E-8 | 0 | 16386 | gtex_brain_putamen_basal |
rs138087973 | 2 | 102946082 | IL1RL1 | ENSG00000115602.12 | 1.876E-8 | 0 | 16713 | gtex_brain_putamen_basal |
rs76498201 | 2 | 102946111 | IL1RL1 | ENSG00000115602.12 | 1.106E-8 | 0 | 16742 | gtex_brain_putamen_basal |
rs12996772 | 2 | 102947201 | IL1RL1 | ENSG00000115602.12 | 1.557E-8 | 0 | 17832 | gtex_brain_putamen_basal |
rs1420102 | 2 | 102948819 | IL1RL1 | ENSG00000115602.12 | 8.979E-9 | 0 | 19450 | gtex_brain_putamen_basal |
rs12466380 | 2 | 102948939 | IL1RL1 | ENSG00000115602.12 | 1.557E-8 | 0 | 19570 | gtex_brain_putamen_basal |
rs12712140 | 2 | 102951062 | IL1RL1 | ENSG00000115602.12 | 1.641E-8 | 0 | 21693 | gtex_brain_putamen_basal |
rs1997467 | 2 | 102951073 | IL1RL1 | ENSG00000115602.12 | 1.557E-8 | 0 | 21704 | gtex_brain_putamen_basal |
rs1997466 | 2 | 102951467 | IL1RL1 | ENSG00000115602.12 | 1.556E-8 | 0 | 22098 | gtex_brain_putamen_basal |
rs1362350 | 2 | 102951798 | IL1RL1 | ENSG00000115602.12 | 1.555E-8 | 0 | 22429 | gtex_brain_putamen_basal |
rs67058052 | 2 | 102951850 | IL1RL1 | ENSG00000115602.12 | 2.031E-8 | 0 | 22481 | gtex_brain_putamen_basal |
rs397969654 | 2 | 102951851 | IL1RL1 | ENSG00000115602.12 | 1.238E-8 | 0 | 22482 | gtex_brain_putamen_basal |
rs1362349 | 2 | 102951972 | IL1RL1 | ENSG00000115602.12 | 1.63E-8 | 0 | 22603 | gtex_brain_putamen_basal |
rs12712141 | 2 | 102953067 | IL1RL1 | ENSG00000115602.12 | 1.557E-8 | 0 | 23698 | gtex_brain_putamen_basal |
rs59247511 | 2 | 102954190 | IL1RL1 | ENSG00000115602.12 | 1.565E-8 | 0 | 24821 | gtex_brain_putamen_basal |
rs55664618 | 2 | 103016216 | IL1RL1 | ENSG00000115602.12 | 3.774E-7 | 0 | 86847 | gtex_brain_putamen_basal |
rs11465727 | 2 | 103064503 | IL1RL1 | ENSG00000115602.12 | 4.008E-7 | 0 | 135134 | gtex_brain_putamen_basal |
rs35566453 | 2 | 103064508 | IL1RL1 | ENSG00000115602.12 | 3.31E-6 | 0 | 135139 | gtex_brain_putamen_basal |
rs397873851 | 2 | 103064511 | IL1RL1 | ENSG00000115602.12 | 3.335E-6 | 0 | 135142 | gtex_brain_putamen_basal |
rs11465730 | 2 | 103066858 | IL1RL1 | ENSG00000115602.12 | 7.279E-7 | 0 | 137489 | gtex_brain_putamen_basal |
rs11678721 | 2 | 103073238 | IL1RL1 | ENSG00000115602.12 | 3.15E-6 | 0 | 143869 | gtex_brain_putamen_basal |
rs11677555 | 2 | 103073293 | IL1RL1 | ENSG00000115602.12 | 7.279E-7 | 0 | 143924 | gtex_brain_putamen_basal |
rs6728475 | 2 | 103073950 | IL1RL1 | ENSG00000115602.12 | 7.279E-7 | 0 | 144581 | gtex_brain_putamen_basal |
rs12712150 | 2 | 103074813 | IL1RL1 | ENSG00000115602.12 | 6.749E-7 | 0 | 145444 | gtex_brain_putamen_basal |
rs6705385 | 2 | 103076569 | IL1RL1 | ENSG00000115602.12 | 2.243E-6 | 0 | 147200 | gtex_brain_putamen_basal |
rs6705498 | 2 | 103076670 | IL1RL1 | ENSG00000115602.12 | 7.279E-7 | 0 | 147301 | gtex_brain_putamen_basal |
rs6719196 | 2 | 103076888 | IL1RL1 | ENSG00000115602.12 | 7.279E-7 | 0 | 147519 | gtex_brain_putamen_basal |
rs11676236 | 2 | 103081695 | IL1RL1 | ENSG00000115602.12 | 7.279E-7 | 0 | 152326 | gtex_brain_putamen_basal |
rs11687013 | 2 | 103081721 | IL1RL1 | ENSG00000115602.12 | 7.279E-7 | 0 | 152352 | gtex_brain_putamen_basal |
rs12463588 | 2 | 103085257 | IL1RL1 | ENSG00000115602.12 | 2.243E-6 | 0 | 155888 | gtex_brain_putamen_basal |
rs2310302 | 2 | 103086049 | IL1RL1 | ENSG00000115602.12 | 2.243E-6 | 0 | 156680 | gtex_brain_putamen_basal |
rs12469887 | 2 | 103086758 | IL1RL1 | ENSG00000115602.12 | 2.243E-6 | 0 | 157389 | gtex_brain_putamen_basal |
rs10195075 | 2 | 103087652 | IL1RL1 | ENSG00000115602.12 | 1.891E-6 | 0 | 158283 | gtex_brain_putamen_basal |
rs1403553 | 2 | 103087662 | IL1RL1 | ENSG00000115602.12 | 1.891E-6 | 0 | 158293 | gtex_brain_putamen_basal |
rs4140786 | 2 | 103088176 | IL1RL1 | ENSG00000115602.12 | 7.279E-7 | 0 | 158807 | gtex_brain_putamen_basal |
rs10201184 | 2 | 103089078 | IL1RL1 | ENSG00000115602.12 | 2.243E-6 | 0 | 159709 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
Top 10 positively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
ANKRD44 | 0.91 | 0.92 |
RRP1B | 0.91 | 0.92 |
SEC24A | 0.91 | 0.95 |
PRRC1 | 0.90 | 0.92 |
SPAST | 0.90 | 0.94 |
IGSF3 | 0.90 | 0.89 |
URB2 | 0.90 | 0.92 |
EPM2AIP1 | 0.90 | 0.93 |
MFHAS1 | 0.90 | 0.90 |
ZXDA | 0.90 | 0.92 |
Top 10 negatively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
FXYD1 | -0.66 | -0.84 |
AF347015.31 | -0.64 | -0.81 |
MT-CO2 | -0.64 | -0.82 |
IFI27 | -0.63 | -0.80 |
C5orf53 | -0.63 | -0.71 |
AF347015.33 | -0.63 | -0.79 |
CXCL14 | -0.62 | -0.82 |
AF347015.27 | -0.62 | -0.78 |
HIGD1B | -0.62 | -0.80 |
HLA-F | -0.61 | -0.70 |
Section III. Gene Ontology annotation
Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
---|---|---|---|---|
GO:0005057 | receptor signaling protein activity | TAS | 1482686 | |
GO:0004888 | transmembrane receptor activity | IEA | - | |
GO:0005515 | protein binding | IPI | 16286016 | |
GO:0004908 | interleukin-1 receptor activity | IEA | - | |
Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
GO:0007165 | signal transduction | TAS | 1482686 | |
GO:0045087 | innate immune response | IEA | - | |
Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
GO:0005813 | centrosome | IDA | 18029348 | |
GO:0005576 | extracellular region | IEA | - | |
GO:0005737 | cytoplasm | IDA | 18029348 | |
GO:0016021 | integral to membrane | IEA | - | |
GO:0005925 | focal adhesion | IDA | 18029348 | |
GO:0005886 | plasma membrane | IEA | - |
Section V. Pathway annotation
Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
---|---|---|---|
NAKAMURA TUMOR ZONE PERIPHERAL VS CENTRAL DN | 634 | 384 | All SZGR 2.0 genes in this pathway |
TONKS TARGETS OF RUNX1 RUNX1T1 FUSION HSC UP | 185 | 126 | All SZGR 2.0 genes in this pathway |
CHIARADONNA NEOPLASTIC TRANSFORMATION KRAS CDC25 DN | 51 | 35 | All SZGR 2.0 genes in this pathway |
CHIARADONNA NEOPLASTIC TRANSFORMATION KRAS UP | 126 | 72 | All SZGR 2.0 genes in this pathway |
CHIARADONNA NEOPLASTIC TRANSFORMATION CDC25 UP | 120 | 73 | All SZGR 2.0 genes in this pathway |
MARKEY RB1 CHRONIC LOF UP | 115 | 78 | All SZGR 2.0 genes in this pathway |
BERENJENO TRANSFORMED BY RHOA UP | 536 | 340 | All SZGR 2.0 genes in this pathway |
HERNANDEZ ABERRANT MITOSIS BY DOCETACEL 2NM DN | 25 | 18 | All SZGR 2.0 genes in this pathway |
HERNANDEZ MITOTIC ARREST BY DOCETAXEL 2 UP | 64 | 45 | All SZGR 2.0 genes in this pathway |
WATTEL AUTONOMOUS THYROID ADENOMA DN | 55 | 29 | All SZGR 2.0 genes in this pathway |
SASAI RESISTANCE TO NEOPLASTIC TRANSFROMATION | 50 | 31 | All SZGR 2.0 genes in this pathway |
LIANG HEMATOPOIESIS STEM CELL NUMBER LARGE VS TINY DN | 45 | 24 | All SZGR 2.0 genes in this pathway |
RICKMAN HEAD AND NECK CANCER C | 113 | 47 | All SZGR 2.0 genes in this pathway |
OKUMURA INFLAMMATORY RESPONSE LPS | 183 | 115 | All SZGR 2.0 genes in this pathway |
BYSTRYKH HEMATOPOIESIS STEM CELL QTL TRANS | 882 | 572 | All SZGR 2.0 genes in this pathway |
BYSTRYKH HEMATOPOIESIS STEM CELL FLI1 | 9 | 8 | All SZGR 2.0 genes in this pathway |
NEMETH INFLAMMATORY RESPONSE LPS UP | 88 | 64 | All SZGR 2.0 genes in this pathway |
AFFAR YY1 TARGETS DN | 234 | 137 | All SZGR 2.0 genes in this pathway |
KUMAR TARGETS OF MLL AF9 FUSION | 405 | 264 | All SZGR 2.0 genes in this pathway |
IVANOVA HEMATOPOIESIS LATE PROGENITOR | 544 | 307 | All SZGR 2.0 genes in this pathway |
KAAB HEART ATRIUM VS VENTRICLE UP | 249 | 170 | All SZGR 2.0 genes in this pathway |
DAZARD RESPONSE TO UV NHEK UP | 244 | 151 | All SZGR 2.0 genes in this pathway |
BURTON ADIPOGENESIS 2 | 72 | 52 | All SZGR 2.0 genes in this pathway |
BROWNE HCMV INFECTION 18HR UP | 178 | 111 | All SZGR 2.0 genes in this pathway |
HAN JNK SINGALING UP | 35 | 21 | All SZGR 2.0 genes in this pathway |
BURTON ADIPOGENESIS PEAK AT 8HR | 39 | 31 | All SZGR 2.0 genes in this pathway |
MONNIER POSTRADIATION TUMOR ESCAPE UP | 393 | 244 | All SZGR 2.0 genes in this pathway |
GAVIN FOXP3 TARGETS CLUSTER P4 | 100 | 62 | All SZGR 2.0 genes in this pathway |
MARTINEZ RB1 TARGETS DN | 543 | 317 | All SZGR 2.0 genes in this pathway |
MARTINEZ TP53 TARGETS UP | 602 | 364 | All SZGR 2.0 genes in this pathway |
MARTINEZ RB1 AND TP53 TARGETS UP | 601 | 369 | All SZGR 2.0 genes in this pathway |
ACEVEDO LIVER CANCER WITH H3K27ME3 UP | 295 | 149 | All SZGR 2.0 genes in this pathway |
ZHENG IL22 SIGNALING DN | 42 | 26 | All SZGR 2.0 genes in this pathway |
MATTHEWS AP1 TARGETS | 17 | 12 | All SZGR 2.0 genes in this pathway |
ALONSO METASTASIS UP | 198 | 128 | All SZGR 2.0 genes in this pathway |
BOYLAN MULTIPLE MYELOMA C D DN | 252 | 155 | All SZGR 2.0 genes in this pathway |
CHEN METABOLIC SYNDROM NETWORK | 1210 | 725 | All SZGR 2.0 genes in this pathway |
DAZARD UV RESPONSE CLUSTER G24 | 28 | 19 | All SZGR 2.0 genes in this pathway |
BRUINS UVC RESPONSE VIA TP53 GROUP C | 92 | 60 | All SZGR 2.0 genes in this pathway |
FEVR CTNNB1 TARGETS UP | 682 | 433 | All SZGR 2.0 genes in this pathway |
TORCHIA TARGETS OF EWSR1 FLI1 FUSION UP | 271 | 165 | All SZGR 2.0 genes in this pathway |
KOINUMA TARGETS OF SMAD2 OR SMAD3 | 824 | 528 | All SZGR 2.0 genes in this pathway |
KATSANOU ELAVL1 TARGETS DN | 148 | 88 | All SZGR 2.0 genes in this pathway |
PLASARI TGFB1 TARGETS 10HR UP | 199 | 143 | All SZGR 2.0 genes in this pathway |
WANG MLL TARGETS | 289 | 188 | All SZGR 2.0 genes in this pathway |
DURAND STROMA S UP | 297 | 194 | All SZGR 2.0 genes in this pathway |