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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: FOXP4

Summary

GeneID

116113

Symbol

FOXP4

Synonyms

FLJ40908|FLJ44184|hFKHLA

Description

forkhead box P4

Locus tag

Gene type

protein-coding

Map location

6p21.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.033

GSMA_IIE

genome scan meta-analysis (European-ancestry samples)

Psr: 0.04433

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003700

transcription factor activity

IEA

GO:0008270

zinc ion binding

IEA

GO:0046872

metal ion binding

IEA

GO:0043565

sequence-specific DNA binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006355

regulation of transcription, DNA-dependent

IEA

GO:0006350

transcription

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005622

intracellular

IEA

GO:0005634

nucleus

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
FOXP1	12CC4 \| FLJ23741 \| HSPC215 \| MGC12942 \| MGC88572 \| MGC99551 \| QRF1 \| hFKH1B	forkhead box P1	-	HPRD,BioGRID	14701752
FOXP2	CAGH44 \| DKFZp686H1726 \| SPCH1 \| TNRC10	forkhead box P2	-	HPRD,BioGRID	14701752
FOXP4	FLJ40908 \| FLJ44184 \| hFKHLA	forkhead box P4	Affinity Capture-Western	BioGRID	14701752

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
CHEMNITZ_RESPONSE_TO_PROSTAGLANDIN_E2_DN	391	222	All SZGR genes in this pathway
PEREZ_TP53_TARGETS	1174	695	All SZGR genes in this pathway
PEREZ_TP63_TARGETS	355	243	All SZGR genes in this pathway
PEREZ_TP53_AND_TP63_TARGETS	205	145	All SZGR genes in this pathway
KOYAMA_SEMA3B_TARGETS_DN	411	249	All SZGR genes in this pathway
FOSTER_TOLERANT_MACROPHAGE_DN	409	268	All SZGR genes in this pathway
BOYLAN_MULTIPLE_MYELOMA_C_CLUSTER_UP	38	26	All SZGR genes in this pathway
BOYLAN_MULTIPLE_MYELOMA_C_UP	47	29	All SZGR genes in this pathway
MEISSNER_BRAIN_HCP_WITH_H3K4ME3_AND_H3K27ME3	1069	729	All SZGR genes in this pathway
JUBAN_TARGETS_OF_SPI1_AND_FLI1_DN	92	60	All SZGR genes in this pathway
DELACROIX_RAR_BOUND_ES	462	273	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-128	474	480	1A	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
miR-128	474	480	1A	hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
miR-129-5p	1015	1021	m8	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
miR-129-5p	1015	1021	m8	hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-133	1376	1382	1A	hsa-miR-133a	UUGGUCCCCUUCAACCAGCUGU
miR-133	1376	1382	1A	hsa-miR-133b	UUGGUCCCCUUCAACCAGCUA
miR-138	285	292	1A,m8	hsa-miR-138^brain	AGCUGGUGUUGUGAAUC
miR-27	474	481	1A,m8	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	474	481	1A,m8	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-299-3p	1564	1571	1A,m8	hsa-miR-299-3p	UAUGUGGGAUGGUAAACCGCUU
miR-299-5p	1131	1137	1A	hsa-miR-299-5p	UGGUUUACCGUCCCACAUACAU
miR-30-5p	1140	1146	1A	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-370	294	300	m8	hsa-miR-370^brain	GCCUGCUGGGGUGGAACCUGG
miR-450	1015	1021	1A	hsa-miR-450	UUUUUGCGAUGUGUUCCUAAUA
miR-9	990	997	1A,m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA
miR-9	990	997	1A,m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.