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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: HOXA1

Summary

GeneID

3198

Symbol

HOXA1

Synonyms

BSAS|HOX1|HOX1F|MGC45232

Description

homeobox A1

Locus tag

Gene type

protein-coding

Map location

7p15.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003700

transcription factor activity

IEA

GO:0003702

RNA polymerase II transcription factor activity

TAS

7622051

GO:0043565

sequence-specific DNA binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006355

regulation of transcription, DNA-dependent

IEA

GO:0007275

multicellular organismal development

TAS

7622051

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
CHIC2	BTL \| MGC21173	cysteine-rich hydrophobic domain 2	Two-hybrid	BioGRID	16189514
EFEMP2	FBLN4 \| MBP1 \| UPH1	EGF-containing fibulin-like extracellular matrix protein 2	Two-hybrid	BioGRID	16189514
GRN	GEP \| GP88 \| PCDGF \| PEPI \| PGRN	granulin	Two-hybrid	BioGRID	16189514
KRTAP4-12	KAP4.12 \| KRTAP4.12	keratin associated protein 4-12	Two-hybrid	BioGRID	16189514
LPXN	LDPL	leupaxin	Two-hybrid	BioGRID	16189514
MDFI	I-MF \| I-mfa	MyoD family inhibitor	Two-hybrid	BioGRID	16189514
PKNOX1	PREP1 \| pkonx1c	PBX/knotted 1 homeobox 1	-	HPRD,BioGRID	9582372
PLSCR1	MMTRA1B	phospholipid scramblase 1	Two-hybrid	BioGRID	16189514
TRAPPC6A	HSPC289 \| MGC2650 \| TRS33	trafficking protein particle complex 6A	Two-hybrid	BioGRID	16189514
TRIP6	MGC10556 \| MGC10558 \| MGC29959 \| MGC3837 \| MGC4423 \| OIP1 \| ZRP-1	thyroid hormone receptor interactor 6	Two-hybrid	BioGRID	16189514

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN	455	304	All SZGR genes in this pathway
TIEN_INTESTINE_PROBIOTICS_2HR_DN	88	53	All SZGR genes in this pathway
ZHOU_INFLAMMATORY_RESPONSE_FIMA_DN	284	156	All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_DN	234	147	All SZGR genes in this pathway
LI_WILMS_TUMOR_VS_FETAL_KIDNEY_2_UP	30	24	All SZGR genes in this pathway
BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN	637	377	All SZGR genes in this pathway
BENPORATH_EED_TARGETS	1062	725	All SZGR genes in this pathway
BENPORATH_ES_WITH_H3K27ME3	1118	744	All SZGR genes in this pathway
SHIN_B_CELL_LYMPHOMA_CLUSTER_6	11	9	All SZGR genes in this pathway
NIKOLSKY_BREAST_CANCER_7P15_AMPLICON	11	5	All SZGR genes in this pathway
ONDER_CDH1_TARGETS_2_DN	464	276	All SZGR genes in this pathway
BYSTRYKH_HEMATOPOIESIS_STEM_CELL_QTL_TRANS	882	572	All SZGR genes in this pathway
ALCALAY_AML_BY_NPM1_LOCALIZATION_UP	140	83	All SZGR genes in this pathway
NOUZOVA_METHYLATED_IN_APL	68	39	All SZGR genes in this pathway
NOUZOVA_TRETINOIN_AND_H4_ACETYLATION	143	85	All SZGR genes in this pathway
SUZUKI_RESPONSE_TO_TSA_AND_DECITABINE_1B	23	14	All SZGR genes in this pathway
SATO_SILENCED_BY_METHYLATION_IN_PANCREATIC_CANCER_2	50	34	All SZGR genes in this pathway
SATO_SILENCED_BY_METHYLATION_IN_PANCREATIC_CANCER_1	419	273	All SZGR genes in this pathway
DURCHDEWALD_SKIN_CARCINOGENESIS_DN	264	168	All SZGR genes in this pathway
MONNIER_POSTRADIATION_TUMOR_ESCAPE_DN	373	196	All SZGR genes in this pathway
HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_UP	461	298	All SZGR genes in this pathway
CHENG_IMPRINTED_BY_ESTRADIOL	110	68	All SZGR genes in this pathway
ACEVEDO_LIVER_CANCER_WITH_H3K9ME3_DN	120	71	All SZGR genes in this pathway
BLUM_RESPONSE_TO_SALIRASIB_UP	245	159	All SZGR genes in this pathway
PARK_TRETINOIN_RESPONSE_AND_PML_RARA_FUSION	30	21	All SZGR genes in this pathway
SCHRAETS_MLL_TARGETS_UP	35	21	All SZGR genes in this pathway
MEISSNER_BRAIN_HCP_WITH_H3K4ME2_AND_H3K27ME3	59	35	All SZGR genes in this pathway
WANG_NFKB_TARGETS	25	15	All SZGR genes in this pathway
PURBEY_TARGETS_OF_CTBP1_AND_SATB1_DN	180	116	All SZGR genes in this pathway
WAKABAYASHI_ADIPOGENESIS_PPARG_RXRA_BOUND_36HR	152	88	All SZGR genes in this pathway
WAKABAYASHI_ADIPOGENESIS_PPARG_RXRA_BOUND_8D	882	506	All SZGR genes in this pathway
ZWANG_CLASS_3_TRANSIENTLY_INDUCED_BY_EGF	222	159	All SZGR genes in this pathway
ZWANG_EGF_INTERVAL_DN	214	124	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-10	578	584	m8	hsa-miR-10a	UACCCUGUAGAUCCGAAUUUGUG
miR-10	578	584	m8	hsa-miR-10b	UACCCUGUAGAACCGAAUUUGU
miR-142-5p	540	546	1A	hsa-miR-142-5p	CAUAAAGUAGAAAGCACUAC
miR-181	909	916	1A,m8	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-203.1	1196	1203	1A,m8	hsa-miR-203	UGAAAUGUUUAGGACCACUAG
miR-210	952	958	1A	hsa-miR-210	CUGUGCGUGUGACAGCGGCUGA
miR-218	60	66	m8	hsa-miR-218^brain	UUGUGCUUGAUCUAACCAUGU
miR-219	1036	1042	1A	hsa-miR-219^brain	UGAUUGUCCAAACGCAAUUCU
miR-23	890	896	m8	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
miR-23	890	896	m8	hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-28	128	134	m8	hsa-miR-28^brain	AAGGAGCUCACAGUCUAUUGAG
miR-30-5p	451	458	1A,m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-323	889	896	1A,m8	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-369-3p	1283	1289	1A	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
miR-374	1283	1290	1A,m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
miR-433-3p	1039	1046	1A,m8	hsa-miR-433^brain	AUCAUGAUGGGCUCCUCGGUGU
miR-493-5p	1033	1039	1A	hsa-miR-493-5p	UUGUACAUGGUAGGCUUUCAUU
miR-99/100	1088	1094	m8	hsa-miR-99a^brain	AACCCGUAGAUCCGAUCUUGUG
				hsa-miR-100^brain	AACCCGUAGAUCCGAACUUGUG
				hsa-miR-99b^brain	CACCCGUAGAACCGACCUUGCG

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.