Gene Page: PCDH1

Summary
GeneID  5097
Symbol  PCDH1
Synonyms  FLJ53887|MGC45991|PC42|PCDH42
Description  protocadherin 1
See related  HGNC:8655|MIM:603626|Ensembl:ENSG00000156453|HPRD:04692|
Locus tag  -
Gene type  protein-coding
Map location  5q32-q33
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.0032 
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 1 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
ATPGD10.950.93
SEMA3B0.950.89
PLXNB30.940.92
TMEM63A0.930.94
GSN0.930.93
FA2H0.930.94
LDB30.930.92
TMC60.930.91
SLC5A110.930.91
C11orf90.920.92
Top 10 negatively co-expressed genes
NKIRAS2-0.58-0.68
NR2C2AP-0.57-0.77
IFT52-0.57-0.76
TRNAU1AP-0.57-0.75
POLB-0.57-0.77
STMN1-0.57-0.77
ALKBH2-0.57-0.77
MED19-0.57-0.75
HN1-0.57-0.74
RARS2-0.57-0.75
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005509calcium ion bindingIEA-
GO:0005515protein bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007399nervous system developmentTASneurite (GO term level: 5)8508762 
GO:0007155cell adhesionIEA-
GO:0007156homophilic cell adhesionIEA-
GO:0007267cell-cell signalingTAS8508762 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005911cell-cell junctionTAS8508762 
GO:0005886plasma membraneTAS8508762 
GO:0005887integral to plasma membraneTAS8508762 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_UP 450256All SZGR genes in this pathway
RODRIGUES_NTN1_TARGETS_DN 158102All SZGR genes in this pathway
DODD_NASOPHARYNGEAL_CARCINOMA_UP 1821933All SZGR genes in this pathway
BENPORATH_ES_1 379235All SZGR genes in this pathway
TARTE_PLASMA_CELL_VS_PLASMABLAST_UP 398262All SZGR genes in this pathway
PETROVA_ENDOTHELIUM_LYMPHATIC_VS_BLOOD_DN 162102All SZGR genes in this pathway
MOREAUX_MULTIPLE_MYELOMA_BY_TACI_UP 412249All SZGR genes in this pathway
IVANOVA_HEMATOPOIESIS_STEM_CELL_LONG_TERM 302191All SZGR genes in this pathway
MEDINA_SMARCA4_TARGETS 4429All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_48HR_DN 504323All SZGR genes in this pathway
KYNG_DNA_DAMAGE_BY_4NQO_OR_UV 6344All SZGR genes in this pathway
KYNG_DNA_DAMAGE_UP 226164All SZGR genes in this pathway
GRADE_COLON_CANCER_UP 871505All SZGR genes in this pathway
MILI_PSEUDOPODIA_CHEMOTAXIS_DN 457302All SZGR genes in this pathway
MILI_PSEUDOPODIA_HAPTOTAXIS_DN 668419All SZGR genes in this pathway
COULOUARN_TEMPORAL_TGFB1_SIGNATURE_DN 13899All SZGR genes in this pathway
ZEMBUTSU_SENSITIVITY_TO_CISPLATIN 2014All SZGR genes in this pathway
ZEMBUTSU_SENSITIVITY_TO_MITOMYCIN 1911All SZGR genes in this pathway
MARTENS_TRETINOIN_RESPONSE_UP 857456All SZGR genes in this pathway
DUTERTRE_ESTRADIOL_RESPONSE_24HR_DN 505328All SZGR genes in this pathway
KOINUMA_TARGETS_OF_SMAD2_OR_SMAD3 824528All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-504162168m8hsa-miR-504AGACCCUGGUCUGCACUCUAU
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


Copyright © Bioinformatics and Systems Medicine Laboratory All Rights Reserved since 2009.