Pulmonary Arterial Hypertension KnowledgeBase (bioinfom_tsdb)
bioinfom_tsdb
Pulmonary Arterial Hypertension KnowledgeBase
General information | Literature | Expression | Regulation | Variant | Interaction

Basic Information

Gene ID

23411

Name

SIRT1

Synonymous

sirtuin 1;SIRT1;sirtuin 1

Definition

NAD-dependent deacetylase sirtuin-1|NAD-dependent protein deacetylase sirtuin-1|SIR2-like protein 1|SIR2alpha|regulatory protein SIR2 homolog 1|sir2-like 1|sirtuin type 1

Position

10q21.3

Gene Type

protein-coding

Mutation summary:

Mutations in domains
Mutational pattern in 17 major cancer types
LoF vs missense mutations
All the copy number variations from COSMIC database V72
All the mutations from COSMIC database V72

Mutation summary in protein domains

Top

We used uniprot protein structure data from ensemble BioMart database. The size of circle shows the relative mutation number.

The non-synonymous (top) and synonymous (bottom) mutational percentage for various cancers

Top

The non-synonymous mutational pattern in 17 major cancer types.
The synonymous mutational pattern in 17 major cancer types.

Loss of Function mutations compare to missense mutations

Top

Loss of Function mutations compare to missense mutation.
The ratio of the loss-of-function mutations over missense mutations is 0.16.

The copy number variations for various cancers

Top

The copy number variations in 17 major cancer groups: 1; Breast, 2; Central nervous system, 3; Cervix, 4; Endometrium, 5; Haematopoietic and lymphoid_tissue, 6; Kidney, 7; Large intestine, 8; Liver, 9; Lung, 10; NS, 11; Ovary, 12; Pancreas, 13; Prostate, 14; Skin, 15; Stomach, 16; Thyroid, 17; Urinary tract

The copy number variations in 17 major cancer types: 1; Breast, 2; Central nervous system, 3; Cervix, 4; Endometrium, 5; Haematopoietic and lymphoid_tissue, 6; Kidney, 7; Large intestine, 8; Liver, 9; Lung, 10; Not specific, 11; Ovary, 12; Pancreas, 13; Prostate, 14; Skin, 15; Stomach, 16; Thyroid, 17; Urinary tract

COSMIC somatic mutation [Top]

Mutation (CDS; AA; Chr)

Site

Histology

Mutation Type

c.1852G>A; p.G618R; 10:67912968-67912968

breastcarcinomaSubstitution - Missense

c.760delA; p.I256fs*2; 10:67889094-67889094

large_intestinecarcinoma; adenocarcinomaDeletion - Frameshift

c.760delA; p.I256fs*2; 10:67889094-67889094

large_intestine; coloncarcinoma; adenocarcinomaDeletion - Frameshift

c.596G>A; p.R199Q; 10:67888930-67888930

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.1646C>G; p.S549C; 10:67912762-67912762

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.2135C>A; p.A712D; 10:67916484-67916484

kidneyother; neoplasmSubstitution - Missense

c.341C>A; p.P114Q; 10:67885062-67885062

large_intestine; caecumcarcinoma; adenocarcinomaSubstitution - Missense

c.1021C>T; p.R341C; 10:67906868-67906868

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.1021C>T; p.R341C; 10:67906868-67906868

large_intestine; caecumcarcinoma; adenocarcinomaSubstitution - Missense

c.1282T>C; p.Y428H; 10:67909367-67909367

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.1945C>T; p.R649C; 10:67916294-67916294

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.1945C>T; p.R649C; 10:67916294-67916294

central_nervous_system; brainprimitive_neuroectodermal_tumour-medulloblastomaSubstitution - Missense

c.1891G>A; p.E631K; 10:67913007-67913007

skin; facecarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.1906C>T; p.R636W; 10:67913022-67913022

boneEwings_sarcoma-peripheral_primitive_neuroectodermal_tumourSubstitution - Missense

c.1220T>C; p.M407T; 10:67909305-67909305

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.1220T>C; p.M407T; 10:67909305-67909305

large_intestinecarcinoma; adenocarcinomaSubstitution - Missense

c.942G>A; p.K314K; 10:67891554-67891554

skinmalignant_melanomaSubstitution - coding silent

c.845G>A; p.R282H; 10:67891457-67891457

large_intestinecarcinoma; adenocarcinomaSubstitution - Missense

c.845G>A; p.R282H; 10:67891457-67891457

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.1828delA; p.N611fs*10; 10:67912944-67912944

stomachadenocarcinomaDeletion - Frameshift

c.963C>T; p.F321F; 10:67906810-67906810

oesophagus; lower_thirdcarcinoma; adenocarcinomaSubstitution - coding silent

c.1147G>A; p.V383I; 10:67908102-67908102

large_intestinecarcinoma; adenocarcinomaSubstitution - Missense

c.2188G>T; p.A730S; 10:67916537-67916537

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.306C>T; p.D102D; 10:67885027-67885027

large_intestinecarcinoma; adenocarcinomaSubstitution - coding silent

c.892G>C; p.D298H; 10:67891504-67891504

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.1546C>T; p.R516*; 10:67912662-67912662

stomachcarcinoma; adenocarcinomaSubstitution - Nonsense

c.770T>G; p.I257R; 10:67889104-67889104

lungcarcinoma; small_cell_carcinomaSubstitution - Missense

c.1558G>T; p.E520*; 10:67912674-67912674

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Nonsense

c.1558G>T; p.E520*; 10:67912674-67912674

large_intestinecarcinoma; adenocarcinomaSubstitution - Nonsense

c.1558G>T; p.E520*; 10:67912674-67912674

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Nonsense

c.1399G>T; p.E467*; 10:67912515-67912515

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Nonsense

c.504C>A; p.A168A; 10:67887490-67887490

stomachcarcinoma; adenocarcinomaSubstitution - coding silent

c.1095C>A; p.S365S; 10:67908050-67908050

pancreascarcinomaSubstitution - coding silent

c.1105G>A; p.A369T; 10:67908060-67908060

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.682C>A; p.L228I; 10:67889016-67889016

pancreascarcinomaSubstitution - Missense

c.2227C>T; p.P743S; 10:67916576-67916576

large_intestinecarcinoma; adenocarcinomaSubstitution - Missense

c.1423G>T; p.D475Y; 10:67912539-67912539

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.1289A>C; p.K430T; 10:67909374-67909374

large_intestine; caecumcarcinoma; adenocarcinomaSubstitution - Missense

c.2018G>A; p.S673N; 10:67916367-67916367

prostatecarcinoma; adenocarcinomaSubstitution - Missense

c.2043G>C; p.Q681H; 10:67916392-67916392

breastcarcinomaSubstitution - Missense

c.877C>T; p.P293S; 10:67891489-67891489

kidneycarcinoma; clear_cell_renal_cell_carcinomaSubstitution - Missense

c.1628G>T; p.R543I; 10:67912744-67912744

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - Missense

c.1441G>A; p.D481N; 10:67912557-67912557

breastcarcinomaSubstitution - Missense

c.408G>A; p.A136A; 10:67885129-67885129

large_intestinecarcinoma; adenocarcinomaSubstitution - coding silent

c.547+1G>A; p.?; 10:67887534-67887534

lungcarcinoma; adenocarcinomaUnknown

c.2094C>T; p.F698F; 10:67916443-67916443

endometriumcarcinoma; endometrioid_carcinomaSubstitution - coding silent

c.1209G>A; p.P403P; 10:67909294-67909294

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - coding silent

c.444C>T; p.F148F; 10:67887430-67887430

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - coding silent

c.1208C>T; p.P403L; 10:67909293-67909293

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.1208C>G; p.P403R; 10:67909293-67909293

ovaryother; neoplasmSubstitution - Missense

c.1646C>T; p.S549F; 10:67912762-67912762

lung; right_lower_lobecarcinoma; adenocarcinomaSubstitution - Missense

c.943G>T; p.E315*; 10:67906790-67906790

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - Nonsense

c.477C>T; p.S159S; 10:67887463-67887463

ovarycarcinoma; serous_carcinomaSubstitution - coding silent

c.1242T>C; p.F414F; 10:67909327-67909327

skinmalignant_melanomaSubstitution - coding silent

c.2059G>A; p.E687K; 10:67916408-67916408

large_intestinecarcinoma; adenocarcinomaSubstitution - Missense

c.2059G>A; p.E687K; 10:67916408-67916408

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.2199G>A; p.V733V; 10:67916548-67916548

oesophagus; middle_thirdcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.1752T>G; p.T584T; 10:67912868-67912868

stomachcarcinoma; adenocarcinomaSubstitution - coding silent

c.1236_1237insT; p.G415fs*2; 10:67909321-67909322

large_intestine; caecumcarcinoma; adenocarcinomaInsertion - Frameshift

c.1236_1237insT; p.G415fs*2; 10:67909321-67909322

large_intestine; caecumcarcinoma; adenocarcinomaInsertion - Frameshift

c.1339C>T; p.P447S; 10:67909424-67909424

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.1547G>A; p.R516Q; 10:67912663-67912663

large_intestine; caecumcarcinoma; adenocarcinomaSubstitution - Missense

c.1547G>A; p.R516Q; 10:67912663-67912663

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.1411C>T; p.H471Y; 10:67912527-67912527

urinary_tract; bladdercarcinomaSubstitution - Missense

c.1015C>T; p.L339L; 10:67906862-67906862

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.214G>T; p.A72S; 10:67884935-67884935

thyroidother; neoplasmSubstitution - Missense

c.844C>A; p.R282S; 10:67891456-67891456

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.476C>T; p.S159F; 10:67887462-67887462

urinary_tract; bladdercarcinoma; transitional_cell_carcinomaSubstitution - Missense

c.1319G>A; p.G440E; 10:67909404-67909404

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.476C>T; p.S159F; 10:67887462-67887462

urinary_tract; bladdercarcinomaSubstitution - Missense

c.2005A>G; p.S669G; 10:67916354-67916354

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.1150C>T; p.R384*; 10:67908105-67908105

large_intestinecarcinoma; adenocarcinomaSubstitution - Nonsense

c.874G>T; p.D292Y; 10:67891486-67891486

kidneyother; neoplasmSubstitution - Missense

c.1850C>T; p.A617V; 10:67912966-67912966

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.620C>T; p.P207L; 10:67888954-67888954

upper_aerodigestive_tract; mouthcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.987C>T; p.F329F; 10:67906834-67906834

skinmalignant_melanomaSubstitution - coding silent

c.686C>T; p.S229L; 10:67889020-67889020

oesophagus; lower_thirdcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.876T>A; p.D292E; 10:67891488-67891488

kidneycarcinoma; clear_cell_renal_cell_carcinomaSubstitution - Missense

c.2024G>A; p.S675N; 10:67916373-67916373

large_intestine; caecumcarcinoma; adenocarcinomaSubstitution - Missense

c.1278G>T; p.M426I; 10:67909363-67909363

urinary_tract; bladdercarcinomaSubstitution - Missense

c.1447G>T; p.D483Y; 10:67912563-67912563

livercarcinoma; hepatocellular_carcinomaSubstitution - Missense

c.994T>C; p.L332L; 10:67906841-67906841

haematopoietic_and_lymphoid_tissuehaematopoietic_neoplasm; acute_myeloid_leukaemiaSubstitution - coding silent

c.1260A>G; p.E420E; 10:67909345-67909345

endometriumcarcinoma; endometrioid_carcinomaSubstitution - coding silent


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