Gene info: ID 151121

Gene: LINC01854

GENE ID: 151121

Synonyms: -

Description: long intergenic non-protein coding RNA 1854

Gene type: ncRNA

Location: 2q21.1

dbXrefs: Ensembl:ENSG00000204460

RefSeq: NC_000002.12

Retrived from: SNP Mapped

SNPs: 10 ANCO-SNPs

Phenotype: AD

# Publications: 0

Sherlock p-value : NA (AD) NA (ND) (Frontal_Cortex)

Pascal p-value : NA (AD) NA (ND)

ANCO-SNPs

SNP ID	Position	Alleles	Trait	Variation Type
rs837899	chr2:129266460 (GRCh38.p7)	G>A	alcohol dependence	SNV(Single Nucleotide Variation)
rs6756671	chr2:129249602 (GRCh38.p7)	G>A	alcohol dependence	SNV(Single Nucleotide Variation)
rs837827	chr2:129246578 (GRCh38.p7)	G>A	alcohol dependence	SNV(Single Nucleotide Variation)
rs1251179	chr2:129246162 (GRCh38.p7)	A>G	alcohol dependence	SNV(Single Nucleotide Variation)
rs1441142	chr2:129245705 (GRCh38.p7)	G>A	alcohol dependence	SNV(Single Nucleotide Variation)
rs6708498	chr2:129244613 (GRCh38.p7)	C>T	alcohol dependence	SNV(Single Nucleotide Variation)
rs1441141	chr2:129244500 (GRCh38.p7)	A>G	alcohol dependence	SNV(Single Nucleotide Variation)
rs10167178	chr2:129244152 (GRCh38.p7)	C>T	alcohol dependence	SNV(Single Nucleotide Variation)
rs4662641	chr2:129242699 (GRCh38.p7)	G>A	alcohol dependence	SNV(Single Nucleotide Variation)
rs4662640	chr2:129242223 (GRCh38.p7)	A>C	alcohol dependence	SNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

There is no DrugBank record for this gene !

There is no CTD record for this GENE !

GO/Pathway

GO ID	GO Term	Qualifier	Evidence	PubMed

GO ID	GO Term	Qualifier	Evidence	PubMed

GO ID	GO Term	Qualifier	Evidence	PubMed

KEGG ID	KEGG Term

Reactome ID	Reactome Term	Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID	Title (Year)	Author	Journal