DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
DSGRGDS
Uniprot ID:
Q9HCL0
Source protein:
Protocadherin-18
Source gene:
PCDH18
Class:
DEG_SCF_TRCP1_1
Location:
872:878
E3 ligase:
BTRC
DEGRON score:
0.995
ASA_SCORE:
63.9857
COIL:
0.7914
CONS_SCORE:
0.5818
DSS_SCORE:
0.5354
HELIX:
0.147
FCONS_SCORE:
1.1321
RIG_SCORE:
0.6052
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D884E
TCGA-2H-A9GF
ESCA
TCGA
DSGRGDS
DEG_SCF_TRCP1_1
0.1667
p.D882Y
TCGA-B5-A1MR
UCEC
TCGA
DSGRGDS
DEG_SCF_TRCP1_1
0.2222
p.E879K
TCGA-D3-A8GI
SKCM
TCGA
DSGRGDS
DEG_SCF_TRCP1_1
0.3056
p.D886N
TCGA-EE-A3JB
SKCM
TCGA
DSGRGDS
DEG_SCF_TRCP1_1
0.1111
p.D886N
TCGA-EE-A3JD
SKCM
TCGA
DSGRGDS
DEG_SCF_TRCP1_1
0.1111
p.D877V
TCGA-HC-7233
PRAD
TCGA
DSGRGDS
DEG_SCF_TRCP1_1
0.6674
p.L887F
TCGA-W3-A824
SKCM
TCGA
DSGRGDS
DEG_SCF_TRCP1_1
0.0833
p.G875A
DO51975
CLLE
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.754
p.R888Q
DO7810
COAD
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.0556
p.R888Q
DO37839
SKCM
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.0556
p.R888Q
DO50287
SKCM
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.0556
p.R888Q
DO48665
SKCM
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.0556
p.K870T
DO222762
COCA
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.2778
p.L886F
DO234270
ESAD
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.1111
p.L886F
DO51271
SKCM
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.1111
p.A879E
DO229027
LICA
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.3056
p.D883Y
DO231646
LINC
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.1944
p.D885N
DO222644
MELA
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.5833
p.D885N
DO218840
SKCA
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.5833
p.D885N
DO50299
SKCM
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.5833
p.D885N
DO51250
SKCM
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.5833
p.R874C
DO51498
PACA
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.8301
p.D876V
DO46813
PRAD
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.7785
p.E878K
DO50284
SKCM
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.7022
p.D881Y
DO41758
UCEC
ICGC
DSGRGDS
DEG_SCF_TRCP1_1
0.25
p.R875H
SIDM01278
Colorectal Carcinoma
GDSC
DSGRGDS
DEG_SCF_TRCP1_1
0.7133
p.E876K
ACH-000548
Head and Neck Cancer
CCLE
DSGRGDS
DEG_SCF_TRCP1_1
0.7022
p.E876K
BHY
upper_aerodigestive_tract
COSMIC
DSGRGDS
DEG_SCF_TRCP1_1
0.7022
p.M868I
ACH-000955
Colon/Colorectal Cancer
CCLE
DSGRGDS
DEG_SCF_TRCP1_1
0.2222
p.M868I
SNU-407
large_intestine
COSMIC
DSGRGDS
DEG_SCF_TRCP1_1
0.2222
p.V883L
ACH-001233
Lung Cancer
CCLE
DSGRGDS
DEG_SCF_TRCP1_1
0.1944
p.V883L
VMRC-LCD
lung
COSMIC
DSGRGDS
DEG_SCF_TRCP1_1
0.1944
Drug responses associated with PCDH18 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of DSGRGDS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q53EL6
Programmed cell death protein 4
DEG_SCF_TRCP1_1
70:76
DSGRGDS
BTRC
0.9941
More...
Q9HCL0
Protocadherin-18
DEG_SCF_TRCP1_1
872:878
DSGRGDS
BTRC
0.995
More...