DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
DSGSAS
Uniprot ID:
O14646
Source protein:
Chromodomain-helicase-DNA-binding protein 1
Source gene:
CHD1
Class:
DEG_SCF_TRCP1_1
Location:
23:28
E3 ligase:
BTRC
DEGRON score:
0.8195
ASA_SCORE:
88.2167
COIL:
0.9678
CONS_SCORE:
0.2342
DSS_SCORE:
0.7691
HELIX:
0.0255
FCONS_SCORE:
1.0023
RIG_SCORE:
0.4687
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S20L
TCGA-BR-4184
STAD
TCGA
DSGSAS
DEG_SCF_TRCP1_1
0.25
p.S20L
DO38328
STAD
ICGC
DSGSAS
DEG_SCF_TRCP1_1
0.25
p.S20L
ACH-001369
Ovarian Cancer
CCLE
DSGSAS
DEG_SCF_TRCP1_1
0.25
p.S36C
TCGA-E9-A229
BRCA
TCGA
DSGSAS
DEG_SCF_TRCP1_1
0.1111
p.S36C
DO5898
BRCA
ICGC
DSGSAS
DEG_SCF_TRCP1_1
0.1111
p.G33V
DO222537
BTCA
ICGC
DSGSAS
DEG_SCF_TRCP1_1
0.1944
p.S36Y
DO228948
LICA
ICGC
DSGSAS
DEG_SCF_TRCP1_1
0.1111
p.S18R
DO229019
LICA
ICGC
DSGSAS
DEG_SCF_TRCP1_1
0.1944
Drug responses associated with CHD1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of DSGSAS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14646
Chromodomain-helicase-DNA-binding protein 1
DEG_SCF_TRCP1_1
23:28
DSGSAS
BTRC
0.8195
More...
O95361
Tripartite motif-containing protein 16
DEG_SCF_TRCP1_1
33:38
DSGSAS
BTRC
0.9986
More...