DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
DSGSSQS
Uniprot ID:
A6NKL6
Source protein:
Transmembrane protein 200C
Source gene:
TMEM200C
Class:
DEG_SCF_TRCP1_1
Location:
521:527
E3 ligase:
BTRC
DEGRON score:
0.9801
ASA_SCORE:
87.2286
COIL:
0.9289
CONS_SCORE:
0.4143
DSS_SCORE:
0.8601
HELIX:
0.0507
FCONS_SCORE:
0.9655
RIG_SCORE:
0.4666
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P530T
TCGA-HF-A5NB
STAD
TCGA
DSGSSQS
DEG_SCF_TRCP1_1
0.25
p.P530T
DO50127
STAD
ICGC
DSGSSQS
DEG_SCF_TRCP1_1
0.25
p.S533R
DO222419
BTCA
ICGC
DSGSSQS
DEG_SCF_TRCP1_1
0.1667
p.D529E
DO229034
LICA
ICGC
DSGSSQS
DEG_SCF_TRCP1_1
0.2778
p.D521E
DO229035
LICA
ICGC
DSGSSQS
DEG_SCF_TRCP1_1
0.6758
p.S522F
DO220906
MELA
ICGC
DSGSSQS
DEG_SCF_TRCP1_1
0.7982
p.D528E
SIDM00594
Acute Myeloid Leukemia
GDSC
DSGSSQS
DEG_SCF_TRCP1_1
0.3056
p.D528E
ACH-000004
Leukemia
CCLE
DSGSSQS
DEG_SCF_TRCP1_1
0.3056
p.D528E
ACH-000005
Leukemia
CCLE
DSGSSQS
DEG_SCF_TRCP1_1
0.3056
p.D528E
HEL
haematopoietic_and_lymphoid_tissue
COSMIC
DSGSSQS
DEG_SCF_TRCP1_1
0.3056
p.P530L
SIDM00260
Gastric Carcinoma
GDSC
DSGSSQS
DEG_SCF_TRCP1_1
0.25
p.P530L
SIDM00248
Gastric Carcinoma
GDSC
DSGSSQS
DEG_SCF_TRCP1_1
0.25
p.P530L
ACH-000758
Gastric Cancer
CCLE
DSGSSQS
DEG_SCF_TRCP1_1
0.25
p.P530L
MKN28
stomach
COSMIC
DSGSSQS
DEG_SCF_TRCP1_1
0.25
p.S515W
SIDM00346
Chronic Myelogenous Leukemia
GDSC
DSGSSQS
DEG_SCF_TRCP1_1
0.1667
p.S515W
ACH-000301
Leukemia
CCLE
DSGSSQS
DEG_SCF_TRCP1_1
0.1667
Drug responses associated with TMEM200C mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of DSGSSQS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P78559
Microtubule-associated protein 1A
DEG_SCF_TRCP1_1
2505:2511
DSGSSQS
BTRC
0.9876
More...
A6NKL6
Transmembrane protein 200C
DEG_SCF_TRCP1_1
521:527
DSGSSQS
BTRC
0.9801
More...