DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
GKENM
Uniprot ID:
Q9BRS8
Source protein:
La-related protein 6
Source gene:
LARP6
Class:
DEG_APCC_KENBOX_2
Location:
282:286
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9927
ASA_SCORE:
80.2
COIL:
0.7152
CONS_SCORE:
0.5626
DSS_SCORE:
0.4294
HELIX:
0.1746
FCONS_SCORE:
1.1218
RIG_SCORE:
0.7182
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.I291T
TCGA-DX-AB2Q
SARC
TCGA
GKENM
DEG_APCC_KENBOX_2
0.1944
p.I291T
DO220087
SARC
ICGC
GKENM
DEG_APCC_KENBOX_2
0.1944
p.T278K
DO229037
LICA
ICGC
GKENM
DEG_APCC_KENBOX_2
0.2222
p.K283E
SIDM00117
Non-Small Cell Lung Carcinoma
GDSC
GKENM
DEG_APCC_KENBOX_2
0.7022
p.K283E
ACH-000837
Lung Cancer
CCLE
GKENM
DEG_APCC_KENBOX_2
0.7022
p.K283E
NCI-H322M
lung
COSMIC
GKENM
DEG_APCC_KENBOX_2
0.7022
p.H273Y
ACH-002202
Gastric Cancer
CCLE
GKENM
DEG_APCC_KENBOX_2
0.0833
p.H273Y
TMK-1
stomach
COSMIC
GKENM
DEG_APCC_KENBOX_2
0.0833
Drug responses associated with LARP6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GKENM
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9BRS8
La-related protein 6
DEG_APCC_KENBOX_2
282:286
GKENM
APC,CDC20,FZR1
0.9927
More...
Q9NXL2
Rho guanine nucleotide exchange factor 38
DEG_APCC_KENBOX_2
8:12
GKENM
APC,CDC20,FZR1
0.9385
More...