DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
GMR
Uniprot ID:
P51955
Source protein:
Serine/threonine-protein kinase Nek2
Source gene:
NEK2
Class:
DEG_APCC_TPR_1
Location:
443:445
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9984
ASA_SCORE:
124.3
COIL:
0.7993
CONS_SCORE:
0.4828
DSS_SCORE:
0.7849
HELIX:
0.1833
FCONS_SCORE:
1.1981
RIG_SCORE:
0.7392
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G443C
TCGA-A5-A0VP
UCEC
TCGA
GMR
DEG_APCC_TPR_1
0.6489
p.G443C
DO42600
UCEC
ICGC
GMR
DEG_APCC_TPR_1
0.6489
p.S438C
ACH-001060
Lymphoma
CCLE
GMR
DEG_APCC_TPR_1
0.6389
p.L436P
SIDM01119
Other Solid Cancers
GDSC
GMR
DEG_APCC_TPR_1
0.1389
p.L436P
NCI-H727
lung
COSMIC
GMR
DEG_APCC_TPR_1
0.1389
p.Q435K
TCGA-D3-A3CE
SKCM
TCGA
GMR
DEG_APCC_TPR_1
0.1111
p.N433K
TCGA-D1-A0ZS
UCEC
TCGA
GMR
DEG_APCC_TPR_1
0.0556
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Drug responses associated with NEK2 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of GMR
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96L96
Alpha-protein kinase 3
DEG_APCC_TPR_1
1905:1907
GMR
APC,CDC20,FZR1
0.9603
More...
P51955
Serine/threonine-protein kinase Nek2
DEG_APCC_TPR_1
443:445
GMR
APC,CDC20,FZR1
0.9984
More...
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