DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
GMR
Uniprot ID:
P51955
Source protein:
Serine/threonine-protein kinase Nek2
Source gene:
NEK2
Class:
DEG_APCC_TPR_1
Location:
443:445
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9984
ASA_SCORE:
124.3
COIL:
0.7993
CONS_SCORE:
0.4828
DSS_SCORE:
0.7849
HELIX:
0.1833
FCONS_SCORE:
1.1981
RIG_SCORE:
0.7392
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G443C
TCGA-A5-A0VP
UCEC
TCGA
GMR
DEG_APCC_TPR_1
0.6489
p.G443C
DO42600
UCEC
ICGC
GMR
DEG_APCC_TPR_1
0.6489
p.N433K
TCGA-D1-A0ZS
UCEC
TCGA
GMR
DEG_APCC_TPR_1
0.0556
p.Q435K
TCGA-D3-A3CE
SKCM
TCGA
GMR
DEG_APCC_TPR_1
0.1111
p.L436P
SIDM01119
Other Solid Cancers
GDSC
GMR
DEG_APCC_TPR_1
0.1389
p.L436P
NCI-H727
lung
COSMIC
GMR
DEG_APCC_TPR_1
0.1389
p.S438C
ACH-001060
Lymphoma
CCLE
GMR
DEG_APCC_TPR_1
0.6389
Drug responses associated with NEK2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GMR
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P51955
Serine/threonine-protein kinase Nek2
DEG_APCC_TPR_1
443:445
GMR
APC,CDC20,FZR1
0.9984
More...
Q96L96
Alpha-protein kinase 3
DEG_APCC_TPR_1
1905:1907
GMR
APC,CDC20,FZR1
0.9603
More...