DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
IVPFRE
Uniprot ID:
O60292
Source protein:
Signal-induced proliferation-associated 1-like protein 3
Source gene:
SIPA1L3
Class:
LIG_APCC_ABBA_1
Location:
1119:1124
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9858
ASA_SCORE:
105.0167
COIL:
0.9118
CONS_SCORE:
0.3383
DSS_SCORE:
0.6426
HELIX:
0.0448
FCONS_SCORE:
0.958
RIG_SCORE:
0.7139
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R1123W
TCGA-16-0848
GBM
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.7523
p.R1123W
DO12196
GBM
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.7523
p.R1123L
TCGA-55-7910
LUAD
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.7316
p.R1123L
DO23669
LUAD
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.7316
p.P1118T
TCGA-5M-AATA
COAD
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.3056
p.I1119M
TCGA-AN-A0AK
BRCA
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.6507
p.I1119M
DO1608
BRCA
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.6507
p.P1121L
TCGA-EE-A2GJ
SKCM
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.6471
p.P1121L
DO37746
SKCM
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.6471
p.K1115N
DO229018
LICA
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.3333
p.R1112W
DO220912
MELA
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.1389
p.K1131Q
SIDM01024
Esophageal Squamous Cell Carcinoma
GDSC
IVPFRE
LIG_APCC_ABBA_1
0.25
p.K1131Q
ACH-000784
Esophageal Cancer
CCLE
IVPFRE
LIG_APCC_ABBA_1
0.25
p.K1131Q
KYSE-70
oesophagus
COSMIC
IVPFRE
LIG_APCC_ABBA_1
0.25
p.V1120I
ACH-002287
Colon/Colorectal Cancer
CCLE
IVPFRE
LIG_APCC_ABBA_1
0.5965
p.V1120I
NCI-H630
large_intestine
COSMIC
IVPFRE
LIG_APCC_ABBA_1
0.5965
Drug responses associated with SIPA1L3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of IVPFRE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60292
Signal-induced proliferation-associated 1-like protein 3
LIG_APCC_ABBA_1
1119:1124
IVPFRE
APC,CDC20,FZR1
0.9858
More...
P98160
Basement membrane-specific heparan sulfate proteoglycan core protein
LIG_APCC_ABBA_1
1056:1061
IVPFRE
APC,CDC20,FZR1
0.5362
More...