DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
IVPFRE
Uniprot ID:
P98160
Source protein:
Basement membrane-specific heparan sulfate proteoglycan core protein
Source gene:
HSPG2
Class:
LIG_APCC_ABBA_1
Location:
1056:1061
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5362
ASA_SCORE:
58.4167
COIL:
0.3245
CONS_SCORE:
0.3769
DSS_SCORE:
0.557
HELIX:
0.0378
FCONS_SCORE:
1.0792
RIG_SCORE:
0.8034
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.F1055V
TCGA-06-5416
GBM
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.3056
p.F1055V
DO10880
GBM
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.3056
p.Q1062K
TCGA-13-0884
OV
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.3056
p.Q1062K
DO28913
OV
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.3056
p.D1068N
TCGA-29-1697
OV
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.1389
p.D1068N
DO230326
COCA
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.1389
p.D1068N
DO28140
OV
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.1389
p.R1060W
TCGA-B5-A11H
UCEC
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.7523
p.R1060W
DO42825
UCEC
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.7523
p.R1066W
TCGA-B5-A1MW
UCEC
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.1944
p.R1066W
DO42913
UCEC
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.1944
p.V1057L
TCGA-C5-A1MN
CESC
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.5654
p.V1057L
DO6257
CESC
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.5654
p.D1068G
TCGA-E6-A1LX
UCEC
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.1389
p.D1068G
DO41020
UCEC
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.1389
p.I1056T
TCGA-EL-A4K9
THCA
TCGA
IVPFRE
LIG_APCC_ABBA_1
0.7078
p.I1056T
DO39139
THCA
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.7078
p.P1058R
DO225065
BRCA
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.7512
p.P1049S
DO222796
BTCA
ICGC
IVPFRE
LIG_APCC_ABBA_1
0.1389
Drug responses associated with HSPG2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of IVPFRE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60292
Signal-induced proliferation-associated 1-like protein 3
LIG_APCC_ABBA_1
1119:1124
IVPFRE
APC,CDC20,FZR1
0.9858
More...
P98160
Basement membrane-specific heparan sulfate proteoglycan core protein
LIG_APCC_ABBA_1
1056:1061
IVPFRE
APC,CDC20,FZR1
0.5362
More...