DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LDPFAD
Uniprot ID:
O75533
Source protein:
Splicing factor 3B subunit 1
Source gene:
SF3B1
Class:
LIG_APCC_ABBA_1
Location:
133:138
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.999
ASA_SCORE:
52.9
COIL:
0.7827
CONS_SCORE:
0.3668
DSS_SCORE:
0.6387
HELIX:
0.1752
FCONS_SCORE:
1.0297
RIG_SCORE:
0.6705
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R124L
TCGA-49-AAR4
LUAD
TCGA
LDPFAD
LIG_APCC_ABBA_1
0.0833
p.R124L
DO218920
LUAD
ICGC
LDPFAD
LIG_APCC_ABBA_1
0.0833
p.G139E
TCGA-AP-A1DK
UCEC
TCGA
LDPFAD
LIG_APCC_ABBA_1
0.3056
p.G139E
DO42033
UCEC
ICGC
LDPFAD
LIG_APCC_ABBA_1
0.3056
p.R124Q
TCGA-AX-A1CE
UCEC
TCGA
LDPFAD
LIG_APCC_ABBA_1
0.0833
p.R124Q
DO42280
UCEC
ICGC
LDPFAD
LIG_APCC_ABBA_1
0.0833
p.M147V
TCGA-AX-A2H8
UCEC
TCGA
LDPFAD
LIG_APCC_ABBA_1
0.0833
p.M147V
DO43674
UCEC
ICGC
LDPFAD
LIG_APCC_ABBA_1
0.0833
p.G140W
TCGA-CV-7252
HNSC
TCGA
LDPFAD
LIG_APCC_ABBA_1
0.2778
p.G140W
DO14176
HNSC
ICGC
LDPFAD
LIG_APCC_ABBA_1
0.2778
p.P135S
TCGA-EE-A2MJ
SKCM
TCGA
LDPFAD
LIG_APCC_ABBA_1
0.6752
p.P135S
DO38099
SKCM
ICGC
LDPFAD
LIG_APCC_ABBA_1
0.6752
p.I128F
DO227657
COCA
ICGC
LDPFAD
LIG_APCC_ABBA_1
0.1944
p.I127T
DO222762
COCA
ICGC
LDPFAD
LIG_APCC_ABBA_1
0.1667
p.A144T
DO229010
COCA
ICGC
LDPFAD
LIG_APCC_ABBA_1
0.1667
p.T125N
DO229035
LICA
ICGC
LDPFAD
LIG_APCC_ABBA_1
0.5556
p.M126I
DO231026
LUSC
ICGC
LDPFAD
LIG_APCC_ABBA_1
0.1389
p.R132C
DO228138
PBCA
ICGC
LDPFAD
LIG_APCC_ABBA_1
0.3056
Drug responses associated with SF3B1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LDPFAD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75061
Putative tyrosine-protein phosphatase auxilin
LIG_APCC_ABBA_1
676:681
LDPFAD
APC,CDC20,FZR1
0.7971
More...
O75533
Splicing factor 3B subunit 1
LIG_APCC_ABBA_1
133:138
LDPFAD
APC,CDC20,FZR1
0.999
More...