DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LGPHTD
Uniprot ID:
Q6PCB5
Source protein:
Lysine-specific demethylase RSBN1L
Source gene:
RSBN1L
Class:
LIG_APCC_ABBA_1
Location:
719:724
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7002
ASA_SCORE:
87.7333
COIL:
0.8972
CONS_SCORE:
0.2775
DSS_SCORE:
0.4438
HELIX:
0.0623
FCONS_SCORE:
1.0336
RIG_SCORE:
0.6935
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S734F
TCGA-W3-A828
SKCM
TCGA
LGPHTD
LIG_APCC_ABBA_1
0.5
p.H722D
SIDM00586
Hepatocellular Carcinoma
GDSC
LGPHTD
LIG_APCC_ABBA_1
0.7688
p.H722D
ACH-000475
Liver Cancer
CCLE
LGPHTD
LIG_APCC_ABBA_1
0.7688
p.H722D
huH-1
liver
COSMIC
LGPHTD
LIG_APCC_ABBA_1
0.7688
p.S717P
SIDM00217
Colorectal Carcinoma
GDSC
LGPHTD
LIG_APCC_ABBA_1
0.2778
p.S717P
ACH-000999
Colon/Colorectal Cancer
CCLE
LGPHTD
LIG_APCC_ABBA_1
0.2778
p.S717P
SNU-1040
large_intestine
COSMIC
LGPHTD
LIG_APCC_ABBA_1
0.2778
Drug responses associated with RSBN1L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LGPHTD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96L91
E1A-binding protein p400
LIG_APCC_ABBA_1
2126:2131
LGPHTD
APC,CDC20,FZR1
0.9881
More...
Q6PCB5
Lysine-specific demethylase RSBN1L
LIG_APCC_ABBA_1
719:724
LGPHTD
APC,CDC20,FZR1
0.7002
More...