DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LHLFND
Uniprot ID:
Q8IW93
Source protein:
Rho guanine nucleotide exchange factor 19
Source gene:
ARHGEF19
Class:
LIG_APCC_ABBA_1
Location:
622:627
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7214
ASA_SCORE:
8.1333
COIL:
0.3975
CONS_SCORE:
0.5755
DSS_SCORE:
0.0157
HELIX:
0.0092
FCONS_SCORE:
1.3798
RIG_SCORE:
0.9472
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S617N
TCGA-14-1794
GBM
TCGA
LHLFND
LIG_APCC_ABBA_1
0.1944
p.S617N
DO13024
GBM
ICGC
LHLFND
LIG_APCC_ABBA_1
0.1944
p.L629F
TCGA-55-7724
LUAD
TCGA
LHLFND
LIG_APCC_ABBA_1
0.2778
p.L629F
DO45373
LUAD
ICGC
LHLFND
LIG_APCC_ABBA_1
0.2778
p.L615Q
TCGA-EE-A3JA
SKCM
TCGA
LHLFND
LIG_APCC_ABBA_1
0.1389
p.L615Q
DO47625
SKCM
ICGC
LHLFND
LIG_APCC_ABBA_1
0.1389
p.E636K
TCGA-GC-A3OO
BLCA
TCGA
LHLFND
LIG_APCC_ABBA_1
0.0833
p.E636K
DO518
BLCA
ICGC
LHLFND
LIG_APCC_ABBA_1
0.0833
p.L622R
TCGA-HF-7133
STAD
TCGA
LHLFND
LIG_APCC_ABBA_1
0.8428
p.L622R
DO38819
STAD
ICGC
LHLFND
LIG_APCC_ABBA_1
0.8428
p.L615M
TCGA-IB-7651
PAAD
TCGA
LHLFND
LIG_APCC_ABBA_1
0.1389
p.L615M
DO46657
PAAD
ICGC
LHLFND
LIG_APCC_ABBA_1
0.1389
p.R633Q
DO234285
ESAD
ICGC
LHLFND
LIG_APCC_ABBA_1
0.1667
p.R634Q
DO222444
ESCA
ICGC
LHLFND
LIG_APCC_ABBA_1
0.1389
p.R634Q
SIDM01378
Ovarian Carcinoma
GDSC
LHLFND
LIG_APCC_ABBA_1
0.1389
p.R634Q
ACH-000646
Ovarian Cancer
CCLE
LHLFND
LIG_APCC_ABBA_1
0.1389
p.L613P
DO229224
THCA
ICGC
LHLFND
LIG_APCC_ABBA_1
0.0833
p.R634W
SIDM00499
Prostate Carcinoma
GDSC
LHLFND
LIG_APCC_ABBA_1
0.1389
p.R634W
SIDM00869
Non-Cancerous
GDSC
LHLFND
LIG_APCC_ABBA_1
0.1389
p.R634W
SIDM00271
Gastric Carcinoma
GDSC
LHLFND
LIG_APCC_ABBA_1
0.1389
Drug responses associated with ARHGEF19 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LHLFND
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q12774
Rho guanine nucleotide exchange factor 5
LIG_APCC_ABBA_1
1419:1424
LHLFND
APC,CDC20,FZR1
0.5856
More...
Q8IW93
Rho guanine nucleotide exchange factor 19
LIG_APCC_ABBA_1
622:627
LHLFND
APC,CDC20,FZR1
0.7214
More...