DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LPPFPD
Uniprot ID:
Q8N9B5
Source protein:
Junction-mediating and -regulatory protein
Source gene:
JMY
Class:
LIG_APCC_ABBA_1
Location:
913:918
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8809
ASA_SCORE:
92.25
COIL:
0.9657
CONS_SCORE:
0.6152
DSS_SCORE:
0.5093
HELIX:
0.0227
FCONS_SCORE:
1.0514
RIG_SCORE:
0.6987
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N924T
TCGA-AG-A002
READ
TCGA
LPPFPD
LIG_APCC_ABBA_1
0.1667
p.K907R
TCGA-D1-A1NY
UCEC
TCGA
LPPFPD
LIG_APCC_ABBA_1
0.2778
p.K907R
DO42512
UCEC
ICGC
LPPFPD
LIG_APCC_ABBA_1
0.2778
p.R911Q
DO227549
COCA
ICGC
LPPFPD
LIG_APCC_ABBA_1
0.2778
p.D918V
DO234307
ESAD
ICGC
LPPFPD
LIG_APCC_ABBA_1
0.7785
p.K907N
DO229035
LICA
ICGC
LPPFPD
LIG_APCC_ABBA_1
0.2778
p.P917S
DO222731
MELA
ICGC
LPPFPD
LIG_APCC_ABBA_1
0.5641
p.N924S
SIDM00561
Other Blood Cancers
GDSC
LPPFPD
LIG_APCC_ABBA_1
0.1667
p.N924S
ACH-002274
Leukemia
CCLE
LPPFPD
LIG_APCC_ABBA_1
0.1667
p.N924S
MLMA
haematopoietic_and_lymphoid_tissue
COSMIC
LPPFPD
LIG_APCC_ABBA_1
0.1667
Drug responses associated with JMY mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPPFPD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P55001
Microfibrillar-associated protein 2
LIG_APCC_ABBA_1
26:31
LPPFPD
APC,CDC20,FZR1
0.9957
More...
Q8N9B5
Junction-mediating and -regulatory protein
LIG_APCC_ABBA_1
913:918
LPPFPD
APC,CDC20,FZR1
0.8809
More...