DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LSLFGD
Uniprot ID:
Q8N9Z9
Source protein:
Lamin tail domain-containing protein 1
Source gene:
LMNTD1
Class:
LIG_APCC_ABBA_1
Location:
107:112
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9557
ASA_SCORE:
56.7333
COIL:
0.4262
CONS_SCORE:
0.5511
DSS_SCORE:
0.2122
HELIX:
0.5115
FCONS_SCORE:
1.4173
RIG_SCORE:
0.8106
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S102R
SIDM00683
Prostate Carcinoma
GDSC
LSLFGD
LIG_APCC_ABBA_1
0.1944
p.S102R
LNCaP-Clone-FGC
prostate
COSMIC
LSLFGD
LIG_APCC_ABBA_1
0.1944
p.F108L
SIDM00332
Breast Carcinoma
GDSC
LSLFGD
LIG_APCC_ABBA_1
0.6981
p.F108L
MFM-223
breast
COSMIC
LSLFGD
LIG_APCC_ABBA_1
0.6981
p.E116K
SIDM01018
Hodgkin's Lymphoma
GDSC
LSLFGD
LIG_APCC_ABBA_1
0.2222
p.E116K
KM-H2
haematopoietic_and_lymphoid_tissue
COSMIC
LSLFGD
LIG_APCC_ABBA_1
0.2222
p.D112E
MFM-223
breast
COSMIC
LSLFGD
LIG_APCC_ABBA_1
0.5647
p.N101Y
DMS-53
lung
COSMIC
LSLFGD
LIG_APCC_ABBA_1
0.1667
p.L115I
HCC2998
large_intestine
COSMIC
LSLFGD
LIG_APCC_ABBA_1
0.3611
p.F110C
NCI-H2110
lung
COSMIC
LSLFGD
LIG_APCC_ABBA_1
0.7108
p.K114N
HT-115
large_intestine
COSMIC
LSLFGD
LIG_APCC_ABBA_1
0.2778
p.S102P
PF-382
haematopoietic_and_lymphoid_tissue
COSMIC
LSLFGD
LIG_APCC_ABBA_1
0.1944
p.S114P
SAT
upper_aerodigestive_tract
COSMIC
LSLFGD
LIG_APCC_ABBA_1
0.2778
Drug responses associated with LMNTD1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LSLFGD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9P1Y6
PHD and RING finger domain-containing protein 1
LIG_APCC_ABBA_1
431:436
LSLFGD
APC,CDC20,FZR1
0.7746
More...
Q8N9Z9
Lamin tail domain-containing protein 1
LIG_APCC_ABBA_1
107:112
LSLFGD
APC,CDC20,FZR1
0.9557
More...