DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPGGS
Uniprot ID:
Q86YW9
Source protein:
Mediator of RNA polymerase II transcription subunit 12-like protein
Source gene:
MED12L
Class:
DEG_SCF_FBW7_1
Location:
1832:1837
E3 ligase:
FBXW7
DEGRON score:
0.997
ASA_SCORE:
65.0667
COIL:
0.946
CONS_SCORE:
0.3856
DSS_SCORE:
0.5511
HELIX:
0.0313
FCONS_SCORE:
1.1176
RIG_SCORE:
0.6258
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G1824S
TCGA-2J-AAB9
PAAD
TCGA
LTPGGS
DEG_SCF_FBW7_1
0.1111
p.G1824S
DO27951
ORCA
ICGC
LTPGGS
DEG_SCF_FBW7_1
0.1111
p.G1824S
DO51658
PAAD
ICGC
LTPGGS
DEG_SCF_FBW7_1
0.1111
p.V1846A
TCGA-A5-A0G1
UCEC
TCGA
LTPGGS
DEG_SCF_FBW7_1
0.0833
p.V1846A
DO42472
UCEC
ICGC
LTPGGS
DEG_SCF_FBW7_1
0.0833
p.S1831Y
TCGA-AP-A0LM
UCEC
TCGA
LTPGGS
DEG_SCF_FBW7_1
0.3056
p.S1831Y
TCGA-QF-A5YS
UCEC
TCGA
LTPGGS
DEG_SCF_FBW7_1
0.3056
p.S1831Y
DO43306
UCEC
ICGC
LTPGGS
DEG_SCF_FBW7_1
0.3056
p.S1831Y
DO52426
UCEC
ICGC
LTPGGS
DEG_SCF_FBW7_1
0.3056
p.L1832F
TCGA-BH-A0W7
BRCA
TCGA
LTPGGS
DEG_SCF_FBW7_1
0.6981
p.L1832F
DO1272
BRCA
ICGC
LTPGGS
DEG_SCF_FBW7_1
0.6981
p.L1827I
TCGA-CE-A481
THCA
TCGA
LTPGGS
DEG_SCF_FBW7_1
0.1944
p.L1827I
DO39974
THCA
ICGC
LTPGGS
DEG_SCF_FBW7_1
0.1944
p.S1844Y
TCGA-EE-A3J5
SKCM
TCGA
LTPGGS
DEG_SCF_FBW7_1
0.1389
p.S1844Y
DO47331
SKCM
ICGC
LTPGGS
DEG_SCF_FBW7_1
0.1389
p.G1836D
TCGA-EO-A3B0
UCEC
TCGA
LTPGGS
DEG_SCF_FBW7_1
0.6087
p.G1836D
DO219773
UCEC
ICGC
LTPGGS
DEG_SCF_FBW7_1
0.6087
p.R1838T
TCGA-GC-A3YS
BLCA
TCGA
LTPGGS
DEG_SCF_FBW7_1
0.3056
p.R1838T
DO850
BLCA
ICGC
LTPGGS
DEG_SCF_FBW7_1
0.3056
p.F1825V
TCGA-L5-A4OU
ESCA
TCGA
LTPGGS
DEG_SCF_FBW7_1
0.1389
p.R1838I
DO52495
COCA
ICGC
LTPGGS
DEG_SCF_FBW7_1
0.3056
p.S1831P
DO46493
OV
ICGC
LTPGGS
DEG_SCF_FBW7_1
0.3056
Drug responses associated with MED12L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPGGS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q86YW9
Mediator of RNA polymerase II transcription subunit 12-like protein
DEG_SCF_FBW7_1
1832:1837
LTPGGS
FBXW7
0.997
More...
Q9H222
ATP-binding cassette sub-family G member 5
DEG_SCF_FBW7_1
7:12
LTPGGS
FBXW7
0.9976
More...