DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPLEE
Uniprot ID:
Q9Y2B5
Source protein:
VPS9 domain-containing protein 1
Source gene:
VPS9D1
Class:
DEG_SCF_FBW7_2
Location:
146:151
E3 ligase:
FBXW7
DEGRON score:
0.9915
ASA_SCORE:
74.2333
COIL:
0.4508
CONS_SCORE:
0.6701
DSS_SCORE:
0.4646
HELIX:
0.5357
FCONS_SCORE:
1.2652
RIG_SCORE:
0.7575
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A137T
TCGA-2G-AAGF
TGCT
TCGA
LTPLEE
DEG_SCF_FBW7_2
0.0833
p.A137T
TCGA-CK-4951
COAD
TCGA
LTPLEE
DEG_SCF_FBW7_2
0.0833
p.A137T
DO10582
COAD
ICGC
LTPLEE
DEG_SCF_FBW7_2
0.0833
p.L149P
TCGA-56-7580
LUSC
TCGA
LTPLEE
DEG_SCF_FBW7_2
0.6471
p.L149P
DO27675
LUSC
ICGC
LTPLEE
DEG_SCF_FBW7_2
0.6471
p.E138Q
DO1094
BRCA
ICGC
LTPLEE
DEG_SCF_FBW7_2
0.1111
p.S141T
DO234343
ESAD
ICGC
LTPLEE
DEG_SCF_FBW7_2
0.1944
p.S153F
DO222837
MELA
ICGC
LTPLEE
DEG_SCF_FBW7_2
0.2778
p.A161V
SIDM00216
Colorectal Carcinoma
GDSC
LTPLEE
DEG_SCF_FBW7_2
0.0556
p.A161V
ACH-000989
Colon/Colorectal Cancer
CCLE
LTPLEE
DEG_SCF_FBW7_2
0.0556
p.A161V
SNU-175
large_intestine
COSMIC
LTPLEE
DEG_SCF_FBW7_2
0.0556
Drug responses associated with VPS9D1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPLEE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8NG31
Kinetochore scaffold 1
DEG_SCF_FBW7_2
1041:1046
LTPLEE
FBXW7
0.7368
More...
Q9Y2B5
VPS9 domain-containing protein 1
DEG_SCF_FBW7_2
146:151
LTPLEE
FBXW7
0.9915
More...