DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPPST
Uniprot ID:
Q8IUM7
Source protein:
Neuronal PAS domain-containing protein 4
Source gene:
NPAS4
Class:
DEG_SCF_FBW7_1
Location:
531:536
E3 ligase:
FBXW7
DEGRON score:
0.9958
ASA_SCORE:
55.8833
COIL:
0.904
CONS_SCORE:
0.461
DSS_SCORE:
0.7104
HELIX:
0.0433
FCONS_SCORE:
1.3236
RIG_SCORE:
0.6163
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P545H
TCGA-99-8032
LUAD
TCGA
LTPPST
DEG_SCF_FBW7_1
0.0833
p.P545H
DO23765
LUAD
ICGC
LTPPST
DEG_SCF_FBW7_1
0.0833
p.S544N
TCGA-AM-5821
COAD
TCGA
LTPPST
DEG_SCF_FBW7_1
0.1111
p.S544N
DO8240
COAD
ICGC
LTPPST
DEG_SCF_FBW7_1
0.1111
p.S544N
SIDM00499
Prostate Carcinoma
GDSC
LTPPST
DEG_SCF_FBW7_1
0.1111
p.S544N
ACH-000956
Prostate Cancer
CCLE
LTPPST
DEG_SCF_FBW7_1
0.1111
p.S544N
22RV1
prostate
COSMIC
LTPPST
DEG_SCF_FBW7_1
0.1111
p.H528Y
TCGA-BF-A1PX
SKCM
TCGA
LTPPST
DEG_SCF_FBW7_1
0.25
p.H528Y
DO51236
SKCM
ICGC
LTPPST
DEG_SCF_FBW7_1
0.25
p.P533S
TCGA-DA-A1I0
SKCM
TCGA
LTPPST
DEG_SCF_FBW7_1
0.6752
p.P533S
TCGA-FS-A1ZC
SKCM
TCGA
LTPPST
DEG_SCF_FBW7_1
0.6752
p.P533S
DO37719
SKCM
ICGC
LTPPST
DEG_SCF_FBW7_1
0.6752
p.P533S
DO37487
SKCM
ICGC
LTPPST
DEG_SCF_FBW7_1
0.6752
p.Q539E
DO229013
COCA
ICGC
LTPPST
DEG_SCF_FBW7_1
0.25
p.D543E
DO233259
GACA
ICGC
LTPPST
DEG_SCF_FBW7_1
0.1389
p.A537T
SIDM00126
Melanoma
GDSC
LTPPST
DEG_SCF_FBW7_1
0.3056
p.A537T
ACH-002147
Skin Cancer
CCLE
LTPPST
DEG_SCF_FBW7_1
0.3056
p.A537T
K2
skin
COSMIC
LTPPST
DEG_SCF_FBW7_1
0.3056
Drug responses associated with NPAS4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPPST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q86X29
Lipolysis-stimulated lipoprotein receptor
DEG_SCF_FBW7_1
500:505
LTPPST
FBXW7
0.9895
More...
Q8IUM7
Neuronal PAS domain-containing protein 4
DEG_SCF_FBW7_1
531:536
LTPPST
FBXW7
0.9958
More...