DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
LTPPTT
Uniprot ID:
Q9UBK2
Source protein:
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
Source gene:
PPARGC1A
Class:
DEG_SCF_FBW7_1
Location:
294:299
E3 ligase:
FBXW7
DEGRON score:
0.9956
ASA_SCORE:
87.4833
COIL:
0.9683
CONS_SCORE:
0.7013
DSS_SCORE:
0.7444
HELIX:
0.0087
FCONS_SCORE:
1.1445
RIG_SCORE:
0.5962
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K303E
TCGA-16-1460
GBM
TCGA
LTPPTT
DEG_SCF_FBW7_1
0.3333
p.K303E
DO13360
GBM
ICGC
LTPPTT
DEG_SCF_FBW7_1
0.3333
p.N305I
TCGA-55-7994
LUAD
TCGA
LTPPTT
DEG_SCF_FBW7_1
0.1667
p.N305I
DO45311
LUAD
ICGC
LTPPTT
DEG_SCF_FBW7_1
0.1667
p.A304D
TCGA-E6-A1LX
UCEC
TCGA
LTPPTT
DEG_SCF_FBW7_1
0.1944
p.A304D
DO229031
LICA
ICGC
LTPPTT
DEG_SCF_FBW7_1
0.1944
p.A304D
DO41020
UCEC
ICGC
LTPPTT
DEG_SCF_FBW7_1
0.1944
p.K303R
TCGA-EE-A2A2
SKCM
TCGA
LTPPTT
DEG_SCF_FBW7_1
0.3333
p.K303R
DO37583
SKCM
ICGC
LTPPTT
DEG_SCF_FBW7_1
0.3333
p.P300S
TCGA-FR-A8YC
SKCM
TCGA
LTPPTT
DEG_SCF_FBW7_1
0.3056
p.P300S
DO50301
SKCM
ICGC
LTPPTT
DEG_SCF_FBW7_1
0.3056
p.G293V
TCGA-L9-A7SV
LUAD
TCGA
LTPPTT
DEG_SCF_FBW7_1
0.3056
p.G293V
DO49875
LUAD
ICGC
LTPPTT
DEG_SCF_FBW7_1
0.3056
p.H302N
DO23444
LINC
ICGC
LTPPTT
DEG_SCF_FBW7_1
0.25
p.A304V
H2804
pleura
COSMIC
LTPPTT
DEG_SCF_FBW7_1
0.1944
p.D303Y
RC-K8
haematopoietic_and_lymphoid_tissue
COSMIC
LTPPTT
DEG_SCF_FBW7_1
0.3333
Drug responses associated with PPARGC1A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPPTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q86YN6
Peroxisome proliferator-activated receptor gamma coactivator 1-beta
DEG_SCF_FBW7_1
604:609
LTPPTT
FBXW7
0.9666
More...
Q9UBK2
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
DEG_SCF_FBW7_1
294:299
LTPPTT
FBXW7
0.9956
More...