DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPTPT
Uniprot ID:
P20908
Source protein:
Collagen alpha-1
Source gene:
COL5A1
Class:
DEG_SCF_FBW7_1
Location:
310:315
E3 ligase:
FBXW7
DEGRON score:
0.997
ASA_SCORE:
72.0333
COIL:
0.9095
CONS_SCORE:
0.2733
DSS_SCORE:
0.8364
HELIX:
0.0405
FCONS_SCORE:
1.1465
RIG_SCORE:
0.6649
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.M320V
TCGA-AO-A128
BRCA
TCGA
LTPTPT
DEG_SCF_FBW7_1
0.1944
p.M320V
DO5326
BRCA
ICGC
LTPTPT
DEG_SCF_FBW7_1
0.1944
p.T311S
TCGA-AR-A2LO
BRCA
TCGA
LTPTPT
DEG_SCF_FBW7_1
0.7116
p.T311S
DO2383
BRCA
ICGC
LTPTPT
DEG_SCF_FBW7_1
0.7116
p.T315P
TCGA-AX-A05Z
UCEC
TCGA
LTPTPT
DEG_SCF_FBW7_1
0.7031
p.T315P
DO40884
UCEC
ICGC
LTPTPT
DEG_SCF_FBW7_1
0.7031
p.A317T
TCGA-BF-A5EQ
SKCM
TCGA
LTPTPT
DEG_SCF_FBW7_1
0.2778
p.A317T
DO219452
SKCM
ICGC
LTPTPT
DEG_SCF_FBW7_1
0.2778
p.T313S
TCGA-D1-A15X
UCEC
TCGA
LTPTPT
DEG_SCF_FBW7_1
0.6005
p.T313S
DO43274
UCEC
ICGC
LTPTPT
DEG_SCF_FBW7_1
0.6005
p.A317S
TCGA-MN-A4N4
LUAD
TCGA
LTPTPT
DEG_SCF_FBW7_1
0.2778
p.A317S
DO26250
LUAD
ICGC
LTPTPT
DEG_SCF_FBW7_1
0.2778
p.P314H
TCGA-V1-A9Z8
PRAD
TCGA
LTPTPT
DEG_SCF_FBW7_1
0.6583
p.P314H
DO219393
PRAD
ICGC
LTPTPT
DEG_SCF_FBW7_1
0.6583
p.E308K
TCGA-VQ-A91K
STAD
TCGA
LTPTPT
DEG_SCF_FBW7_1
0.2778
p.E308K
DO51785
STAD
ICGC
LTPTPT
DEG_SCF_FBW7_1
0.2778
p.T315M
DO48425
BLCA
ICGC
LTPTPT
DEG_SCF_FBW7_1
0.7423
p.P307L
SIDM00660
Colorectal Carcinoma
GDSC
LTPTPT
DEG_SCF_FBW7_1
0.25
p.P307L
ACH-000985
Colon/Colorectal Cancer
CCLE
LTPTPT
DEG_SCF_FBW7_1
0.25
p.P307L
LS-411N
large_intestine
COSMIC
LTPTPT
DEG_SCF_FBW7_1
0.25
p.A300S
SIDM00348
Esophageal Squamous Cell Carcinoma
GDSC
LTPTPT
DEG_SCF_FBW7_1
0.0556
p.A300S
ACH-000488
Esophageal Cancer
CCLE
LTPTPT
DEG_SCF_FBW7_1
0.0556
p.A300S
TE-11
oesophagus
COSMIC
LTPTPT
DEG_SCF_FBW7_1
0.0556
p.A318D
SIDM00859
B-Cell Non-Hodgkin's Lymphoma
GDSC
LTPTPT
DEG_SCF_FBW7_1
0.25
p.A318D
ACH-001498
Lymphoma
CCLE
LTPTPT
DEG_SCF_FBW7_1
0.25
p.A318D
Farage
haematopoietic_and_lymphoid_tissue
COSMIC
LTPTPT
DEG_SCF_FBW7_1
0.25
p.A300T
ACH-001664
Gastric Cancer
CCLE
LTPTPT
DEG_SCF_FBW7_1
0.0556
Drug responses associated with COL5A1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPTPT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P20908
Collagen alpha-1
DEG_SCF_FBW7_1
310:315
LTPTPT
FBXW7
0.997
More...
Q9NR99
Matrix-remodeling-associated protein 5
DEG_SCF_FBW7_1
1001:1006
LTPTPT
FBXW7
0.8541
More...