DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PPTTPCST
Uniprot ID:
O75197
Source protein:
Low-density lipoprotein receptor-related protein 5
Source gene:
LRP5
Class:
DEG_SCF_FBW7_1
Location:
1538:1545
E3 ligase:
FBXW7
DEGRON score:
0.9143
ASA_SCORE:
64.275
COIL:
0.9011
CONS_SCORE:
0.5225
DSS_SCORE:
0.3572
HELIX:
0.0568
FCONS_SCORE:
1.223
RIG_SCORE:
0.727
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.C1548R
TCGA-06-1802
GBM
TCGA
PPTTPCST
DEG_SCF_FBW7_1
0.25
p.C1548R
DO12100
GBM
ICGC
PPTTPCST
DEG_SCF_FBW7_1
0.25
p.D1551V
TCGA-G3-A5SL
LIHC
TCGA
PPTTPCST
DEG_SCF_FBW7_1
0.1667
p.D1551V
DO44978
LIHC
ICGC
PPTTPCST
DEG_SCF_FBW7_1
0.1667
p.T1541M
TCGA-HU-A4H2
STAD
TCGA
PPTTPCST
DEG_SCF_FBW7_1
0.7423
p.T1541M
DO47825
STAD
ICGC
PPTTPCST
DEG_SCF_FBW7_1
0.7423
p.T1541M
SIDM00151
Ovarian Carcinoma
GDSC
PPTTPCST
DEG_SCF_FBW7_1
0.7423
p.T1541M
ACH-000966
Ovarian Cancer
CCLE
PPTTPCST
DEG_SCF_FBW7_1
0.7423
p.T1541M
IGROV-1
ovary
COSMIC
PPTTPCST
DEG_SCF_FBW7_1
0.7423
p.R1534G
TCGA-LP-A5U2
CESC
TCGA
PPTTPCST
DEG_SCF_FBW7_1
0.2222
p.R1534G
DO51610
CESC
ICGC
PPTTPCST
DEG_SCF_FBW7_1
0.2222
p.R1534G
SIDM01112
Osteosarcoma
GDSC
PPTTPCST
DEG_SCF_FBW7_1
0.2222
p.R1534G
ACH-000748
Bone Cancer
CCLE
PPTTPCST
DEG_SCF_FBW7_1
0.2222
p.R1534G
SJSA-1
bone
COSMIC
PPTTPCST
DEG_SCF_FBW7_1
0.2222
p.A1537V
DO233652
GACA
ICGC
PPTTPCST
DEG_SCF_FBW7_1
0.3056
p.V1547L
DO218554
ORCA
ICGC
PPTTPCST
DEG_SCF_FBW7_1
0.2778
p.T1540A
DO229470
SKCA
ICGC
PPTTPCST
DEG_SCF_FBW7_1
0.6028
p.C1548F
SIDM00589
Oral Cavity Carcinoma
GDSC
PPTTPCST
DEG_SCF_FBW7_1
0.25
p.C1548F
HSC-3
upper_aerodigestive_tract
COSMIC
PPTTPCST
DEG_SCF_FBW7_1
0.25
p.T1540M
SIDM00235
Kidney Carcinoma
GDSC
PPTTPCST
DEG_SCF_FBW7_1
0.6312
p.T1540M
SIDM00579
Neuroblastoma
GDSC
PPTTPCST
DEG_SCF_FBW7_1
0.6312
p.T1540M
SIDM00302
Other Solid Cancers
GDSC
PPTTPCST
DEG_SCF_FBW7_1
0.6312
p.T1540M
SIDM01781
Gastric Carcinoma
GDSC
PPTTPCST
DEG_SCF_FBW7_1
0.6312
p.T1540M
SIDM01574
Plasma Cell Myeloma
GDSC
PPTTPCST
DEG_SCF_FBW7_1
0.6312
p.T1540M
NB(TU)1-10
autonomic_ganglia
COSMIC
PPTTPCST
DEG_SCF_FBW7_1
0.6312
p.T1540M
RCC10RGB
kidney
COSMIC
PPTTPCST
DEG_SCF_FBW7_1
0.6312
p.T1540M
KGN
ovary
COSMIC
PPTTPCST
DEG_SCF_FBW7_1
0.6312
Drug responses associated with LRP5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPTTPCST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75197
Low-density lipoprotein receptor-related protein 5
DEG_SCF_FBW7_1
1538:1545
PPTTPCST
FBXW7
0.9143
More...
O75581
Low-density lipoprotein receptor-related protein 6
DEG_SCF_FBW7_1
1527:1534
PPTTPCST
FBXW7
0.998
More...