DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PVTPKPT
Uniprot ID:
Q14676
Source protein:
Mediator of DNA damage checkpoint protein 1
Source gene:
MDC1
Class:
DEG_SCF_FBW7_1
Location:
1136:1142
E3 ligase:
FBXW7
DEGRON score:
0.9837
ASA_SCORE:
102.4286
COIL:
0.9644
CONS_SCORE:
0.348
DSS_SCORE:
0.8058
HELIX:
0.0127
FCONS_SCORE:
1.0063
RIG_SCORE:
0.597
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1143Y
TCGA-AX-A2HC
UCEC
TCGA
PVTPKPT
DEG_SCF_FBW7_1
0.3056
p.P1139S
TCGA-EB-A3XC
SKCM
TCGA
PVTPKPT
DEG_SCF_FBW7_1
0.6752
p.P1127L
TCGA-W3-AA1V
SKCM
TCGA
PVTPKPT
DEG_SCF_FBW7_1
0.0833
p.R1126W
DO9514
COAD
ICGC
PVTPKPT
DEG_SCF_FBW7_1
0.0556
p.R1134I
DO233754
GACA
ICGC
PVTPKPT
DEG_SCF_FBW7_1
0.2778
p.G1137C
DO14766
HNSC
ICGC
PVTPKPT
DEG_SCF_FBW7_1
0.76
p.P1152L
DO27128
LUSC
ICGC
PVTPKPT
DEG_SCF_FBW7_1
0.0556
p.R1126Q
DO51784
STAD
ICGC
PVTPKPT
DEG_SCF_FBW7_1
0.0556
p.A1134V
SIDM00126
Melanoma
GDSC
PVTPKPT
DEG_SCF_FBW7_1
0.2778
p.A1134V
ACH-002147
Skin Cancer
CCLE
PVTPKPT
DEG_SCF_FBW7_1
0.2778
p.A1134V
K2
skin
COSMIC
PVTPKPT
DEG_SCF_FBW7_1
0.2778
p.S1148N
SIDM01611
Endometrial Carcinoma
GDSC
PVTPKPT
DEG_SCF_FBW7_1
0.1667
p.S1148N
ACH-000996
Endometrial/Uterine Cancer
CCLE
PVTPKPT
DEG_SCF_FBW7_1
0.1667
Drug responses associated with MDC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVTPKPT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1136:1142
PVTPKPT
FBXW7
0.9837
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1300:1306
PVTPKPT
FBXW7
0.9946
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1341:1347
PVTPKPT
FBXW7
0.9988
More...