DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PVTPKPT
Uniprot ID:
Q14676
Source protein:
Mediator of DNA damage checkpoint protein 1
Source gene:
MDC1
Class:
DEG_SCF_FBW7_1
Location:
1300:1306
E3 ligase:
FBXW7
DEGRON score:
0.9946
ASA_SCORE:
101.9286
COIL:
0.9607
CONS_SCORE:
0.3002
DSS_SCORE:
0.7852
HELIX:
0.0106
FCONS_SCORE:
1.019
RIG_SCORE:
0.6189
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R1313K
TCGA-90-7766
LUSC
TCGA
PVTPKPT
DEG_SCF_FBW7_1
0.1389
p.R1308W
TCGA-AN-A0AK
BRCA
TCGA
PVTPKPT
DEG_SCF_FBW7_1
0.2778
p.R1308Q
TCGA-VQ-A8P2
STAD
TCGA
PVTPKPT
DEG_SCF_FBW7_1
0.2778
p.R1298K
DO459
BLCA
ICGC
PVTPKPT
DEG_SCF_FBW7_1
0.2778
p.P1309A
DO22397
LGG
ICGC
PVTPKPT
DEG_SCF_FBW7_1
0.25
p.I1310V
DO231862
LINC
ICGC
PVTPKPT
DEG_SCF_FBW7_1
0.2222
p.R1292Q
DO230525
LUSC
ICGC
PVTPKPT
DEG_SCF_FBW7_1
0.1111
p.P1316S
DO222749
MELA
ICGC
PVTPKPT
DEG_SCF_FBW7_1
0.0556
p.V1301L
SIDM00458
Acute Myeloid Leukemia
GDSC
PVTPKPT
DEG_SCF_FBW7_1
0.5654
p.V1301L
SIDM00820
Kidney Carcinoma
GDSC
PVTPKPT
DEG_SCF_FBW7_1
0.5654
p.V1301L
SIDM00842
Colorectal Carcinoma
GDSC
PVTPKPT
DEG_SCF_FBW7_1
0.5654
p.V1301L
SIDM00859
B-Cell Non-Hodgkin's Lymphoma
GDSC
PVTPKPT
DEG_SCF_FBW7_1
0.5654
p.V1301L
OCI-M1
haematopoietic_and_lymphoid_tissue
COSMIC
PVTPKPT
DEG_SCF_FBW7_1
0.5654
p.V1301L
Farage
haematopoietic_and_lymphoid_tissue
COSMIC
PVTPKPT
DEG_SCF_FBW7_1
0.5654
p.V1301L
COLO-320-HSR
large_intestine
COSMIC
PVTPKPT
DEG_SCF_FBW7_1
0.5654
p.V1301L
RCC-ER
kidney
COSMIC
PVTPKPT
DEG_SCF_FBW7_1
0.5654
Drug responses associated with MDC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVTPKPT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1136:1142
PVTPKPT
FBXW7
0.9837
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1300:1306
PVTPKPT
FBXW7
0.9946
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1341:1347
PVTPKPT
FBXW7
0.9988
More...