DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENA
Uniprot ID:
Q12766
Source protein:
HMG domain-containing protein 3
Source gene:
HMGXB3
Class:
DEG_APCC_KENBOX_2
Location:
382:386
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7913
ASA_SCORE:
102.78
COIL:
0.7392
CONS_SCORE:
0.5411
DSS_SCORE:
0.6244
HELIX:
0.2428
FCONS_SCORE:
0.9097
RIG_SCORE:
0.6662
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S394L
TCGA-D5-6540
COAD
TCGA
SKENA
DEG_APCC_KENBOX_2
0.1111
p.S394L
DO9708
COAD
ICGC
SKENA
DEG_APCC_KENBOX_2
0.1111
p.E378K
ACH-002042
Thyroid Cancer
CCLE
SKENA
DEG_APCC_KENBOX_2
0.2222
p.S389I
EN
endometrium
COSMIC
SKENA
DEG_APCC_KENBOX_2
0.25
p.S389I
YKG-1
central_nervous_system
COSMIC
SKENA
DEG_APCC_KENBOX_2
0.25
p.S389I
KY821
haematopoietic_and_lymphoid_tissue
COSMIC
SKENA
DEG_APCC_KENBOX_2
0.25
p.S389I
KINGS-1
central_nervous_system
COSMIC
SKENA
DEG_APCC_KENBOX_2
0.25
p.P372S
HEC-1
endometrium
COSMIC
SKENA
DEG_APCC_KENBOX_2
0.0556
p.R388W
PA-1
ovary
COSMIC
SKENA
DEG_APCC_KENBOX_2
0.2778
Drug responses associated with HMGXB3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENA
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8WXI7
Mucin-16
DEG_APCC_KENBOX_2
202:206
SKENA
APC,CDC20,FZR1
0.971
More...
Q12766
HMG domain-containing protein 3
DEG_APCC_KENBOX_2
382:386
SKENA
APC,CDC20,FZR1
0.7913
More...