DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VCTSS
Uniprot ID:
O60296
Source protein:
Trafficking kinesin-binding protein 2
Source gene:
TRAK2
Class:
DEG_SPOP_SBC_1
Location:
901:905
E3 ligase:
SPOP
DEGRON score:
0.7725
ASA_SCORE:
83.16
COIL:
0.8714
CONS_SCORE:
0.3462
DSS_SCORE:
0.2956
HELIX:
0.0204
FCONS_SCORE:
0.9391
RIG_SCORE:
0.7463
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P906L
TCGA-A5-A1OK
UCEC
TCGA
VCTSS
DEG_SPOP_SBC_1
0.3056
p.P906L
DO42376
UCEC
ICGC
VCTSS
DEG_SPOP_SBC_1
0.3056
p.P900T
TCGA-EE-A2GI
SKCM
TCGA
VCTSS
DEG_SPOP_SBC_1
0.3056
p.P900T
DO37410
SKCM
ICGC
VCTSS
DEG_SPOP_SBC_1
0.3056
p.M894I
TCGA-EE-A2M8
SKCM
TCGA
VCTSS
DEG_SPOP_SBC_1
0.1389
p.M894I
DO38075
SKCM
ICGC
VCTSS
DEG_SPOP_SBC_1
0.1389
p.A899V
TCGA-EP-A26S
LIHC
TCGA
VCTSS
DEG_SPOP_SBC_1
0.2778
p.A899V
DO22854
LIHC
ICGC
VCTSS
DEG_SPOP_SBC_1
0.2778
p.A899P
TCGA-EP-A26S
LIHC
TCGA
VCTSS
DEG_SPOP_SBC_1
0.2778
p.A899P
DO22854
LIHC
ICGC
VCTSS
DEG_SPOP_SBC_1
0.2778
p.K912R
SIDM00392
Melanoma
GDSC
VCTSS
DEG_SPOP_SBC_1
0.25
p.K912R
ACH-000810
Skin Cancer
CCLE
VCTSS
DEG_SPOP_SBC_1
0.25
p.K912R
SK-MEL-30
skin
COSMIC
VCTSS
DEG_SPOP_SBC_1
0.25
Drug responses associated with TRAK2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VCTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60296
Trafficking kinesin-binding protein 2
DEG_SPOP_SBC_1
901:905
VCTSS
SPOP
0.7725
More...
O75592
E3 ubiquitin-protein ligase MYCBP2
DEG_SPOP_SBC_1
2935:2939
VCTSS
SPOP
0.988
More...