DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VESTT
Uniprot ID:
Q9UMS6
Source protein:
Synaptopodin-2
Source gene:
SYNPO2
Class:
DEG_SPOP_SBC_1
Location:
113:117
E3 ligase:
SPOP
DEGRON score:
0.9987
ASA_SCORE:
79.26
COIL:
0.763
CONS_SCORE:
0.4908
DSS_SCORE:
0.3976
HELIX:
0.0884
FCONS_SCORE:
1.0426
RIG_SCORE:
0.7764
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E105K
TCGA-AP-A059
UCEC
TCGA
VESTT
DEG_SPOP_SBC_1
0.1111
p.E105K
DO41361
UCEC
ICGC
VESTT
DEG_SPOP_SBC_1
0.1111
p.G110E
TCGA-AX-A1CE
UCEC
TCGA
VESTT
DEG_SPOP_SBC_1
0.25
p.G110E
DO42280
UCEC
ICGC
VESTT
DEG_SPOP_SBC_1
0.25
p.A123V
TCGA-BR-8060
STAD
TCGA
VESTT
DEG_SPOP_SBC_1
0.1667
p.A123V
DO38205
STAD
ICGC
VESTT
DEG_SPOP_SBC_1
0.1667
p.R121Q
TCGA-W3-AA1Q
SKCM
TCGA
VESTT
DEG_SPOP_SBC_1
0.2222
p.R121Q
DO233624
GACA
ICGC
VESTT
DEG_SPOP_SBC_1
0.2222
p.R121Q
DO219487
SKCM
ICGC
VESTT
DEG_SPOP_SBC_1
0.2222
Drug responses associated with SYNPO2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VESTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5UIP0
Telomere-associated protein RIF1
DEG_SPOP_SBC_1
1425:1429
VESTT
SPOP
0.9633
More...
Q9UMS6
Synaptopodin-2
DEG_SPOP_SBC_1
113:117
VESTT
SPOP
0.9987
More...