DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VFPFRD
Uniprot ID:
Q15361
Source protein:
Transcription termination factor 1
Source gene:
TTF1
Class:
LIG_APCC_ABBA_1
Location:
859:864
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8875
ASA_SCORE:
66.3
COIL:
0.2975
CONS_SCORE:
0.3853
DSS_SCORE:
0.4189
HELIX:
0.1507
FCONS_SCORE:
1.0237
RIG_SCORE:
0.8474
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Y867C
TCGA-55-8302
LUAD
TCGA
VFPFRD
LIG_APCC_ABBA_1
0.25
p.Y867C
DO45312
LUAD
ICGC
VFPFRD
LIG_APCC_ABBA_1
0.25
p.D864N
TCGA-BR-8680
STAD
TCGA
VFPFRD
LIG_APCC_ABBA_1
0.6932
p.D864N
DO47769
STAD
ICGC
VFPFRD
LIG_APCC_ABBA_1
0.6932
p.T852N
DO229015
LICA
ICGC
VFPFRD
LIG_APCC_ABBA_1
0.1389
p.E873K
SIDM00304
Ovarian Carcinoma
GDSC
VFPFRD
LIG_APCC_ABBA_1
0.0833
p.E873K
ACH-002146
Ovarian Cancer
CCLE
VFPFRD
LIG_APCC_ABBA_1
0.0833
p.E873K
JHOS-3
ovary
COSMIC
VFPFRD
LIG_APCC_ABBA_1
0.0833
p.A854V
SIDM00839
Colorectal Carcinoma
GDSC
VFPFRD
LIG_APCC_ABBA_1
0.1944
p.A854V
ACH-000950
Colon/Colorectal Cancer
CCLE
VFPFRD
LIG_APCC_ABBA_1
0.1944
p.A854V
LoVo
large_intestine
COSMIC
VFPFRD
LIG_APCC_ABBA_1
0.1944
Drug responses associated with TTF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VFPFRD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q15361
Transcription termination factor 1
LIG_APCC_ABBA_1
859:864
VFPFRD
APC,CDC20,FZR1
0.8875
More...
Q9H9F9
Actin-related protein 5
LIG_APCC_ABBA_1
5:10
VFPFRD
APC,CDC20,FZR1
0.9684
More...